Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

 Score =  106 bits (265), Expect = 4e-27
 Identities = 129/555 (23%), Positives = 220/555 (39%), Gaps = 79/555 (14%)

Query: 95  PGKEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIG-GDEKRY--KRVVFNEIT 151
           P   K +  ++KL   AD +  A D DREG+ +   + E +   +EKR   +R + N++ 
Sbjct: 79  PSVSKQLNVIKKLLTQADEIIHAGDPDREGQLLVDEVLEYLALSEEKRQHVRRCLINDLN 138

Query: 152 KNAIQQAFKQPGELN-----------------MDGVNAQQARRFMDRVVGFMVSPLLWKK 194
             A+++A  +  E                   + G+N  +A   + R  G+         
Sbjct: 139 PQAVERAVSRMRENREFVPLCVSALARSRADWLYGINMTRAYTLLGRNAGY--------- 189

Query: 195 VARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAF 254
               LS GRVQ+  + L+V R+ EI  FVP +++++ A  +T   + F  L    +  + 
Sbjct: 190 -EGVLSVGRVQTPVLGLVVRRDEEIDNFVPRDYFEVKAHIVTPAGERFVALWQPSE--SC 246

Query: 255 KPVNETE--------ALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLG 306
           +P  + E        A   V  ++     V    DK  +     P+  S LQ  A+ R G
Sbjct: 247 EPYQDEEGRLLHRPLAEHVVKRIDGQPAWVSAYNDKRESETAPLPYSLSALQIEAAKRFG 306

Query: 307 YGVKKTMMLAQRLYEA-GYITYMRTDSTNLSAE---AVENLRGYITKHYGEAYLPSQPNV 362
              ++ + + QRLYE    ITY R+D   L  E     + +   I  H  +  L +QP V
Sbjct: 307 LSAQQVLDVCQRLYETHKLITYPRSDCRYLPEEHFAGRQAVLNAIAAHQPD--LLAQPAV 364

Query: 363 YGSKQN------AQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQY 416
              ++N        +AH AI P+  +        +     ++Y LI  Q++      A +
Sbjct: 365 DPERRNRCWDDSKVDAHHAIIPTARSART----SLTESESQVYGLIARQYLMQFCADAVF 420

Query: 417 DSTTVSVKAAEYTLKAKGRILKFDGWTRV---QRPLGKNEDQILPPVKVGDSLKLVSLDP 473
               + +  A     AK R L   GW  +   +    +NE   LP V  GD L     + 
Sbjct: 421 RKCVIDLDIAGGKFVAKARFLAEAGWRTLLGHKERDEENEGTPLPVVAKGDELLCERGEV 480

Query: 474 KQHFTKPPARYTEAALVKEL-----------------EKRGIGRPSTYASIISTIQDRGY 516
            +  T+PP  +T+A L+  +                 E  G+G  +T A II  +  R +
Sbjct: 481 VERQTQPPRHFTDATLLSAMTGIARFVQDKALKKILRETDGLGTEATRAGIIELLFKRAF 540

Query: 517 VKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFA 576
           +    R   + + G+ +   L        + D TA  E  L QI+E    +   +     
Sbjct: 541 LIKKGRYIHSTEAGKALIHALPPM---AAHPDMTAHWEATLTQISEKHCRYQDFMQPLTQ 597

Query: 577 DFSRDLETAEQDESL 591
                ++ A Q  ++
Sbjct: 598 SLHELIQQARQSGNI 612