Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., DNA topoisomerase III from Dickeya dianthicola ME23

 Score =  112 bits (281), Expect = 6e-29
 Identities = 152/604 (25%), Positives = 229/604 (37%), Gaps = 95/604 (15%)

Query: 102 AELQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKRYKRVV----FNEITKNAIQQ 157
           A + +L K +D V +ATD DREGE IA  L E       R+  VV     + + + ++++
Sbjct: 85  AVITRLLKQSDEVVIATDADREGEVIARELLEYC-----RFNGVVSRLWLSALDEASVRK 139

Query: 158 AFK--QPGELNMDGVNAQQARRFMDRVVGFMVSPLLWKKVAR-----GLSAGRVQSVAVK 210
           A    +PG    +   A   R   D ++G  +S L   K         LS GRVQ+ A+ 
Sbjct: 140 ALANIRPGNETENLYYAGLGRGRADWLIGMNISRLYTLKARELGYDGVLSVGRVQTPALA 199

Query: 211 LLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEALAAVAALN 270
           L+V R+R I +FVP+ ++ +N       K +   +V   + +A     + E      A+ 
Sbjct: 200 LVVNRDRLIASFVPKPYFQVNV------KLESGGVVFPAEWVAAAAYTDGERRCVNQAVA 253

Query: 271 KAQYEVCKREDKPT-------TSKPSAP--FITSTLQQAASTRLGYGVKKTMMLAQRLYE 321
           +   ++C    K           K  AP  F    LQQ  + R GY  ++ +  AQ LYE
Sbjct: 254 EQVRKLCLTVGKAVILDVEKKREKIPAPLAFSLGVLQQVCAERFGYSPQQVLDTAQALYE 313

Query: 322 A-GYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQPNV----------YGSK---Q 367
                TY RTD   L    +  +      H   A   S P++          + S+    
Sbjct: 314 THKATTYPRTDCGYLPESMLSEV-----PHVLSALQQSDPSLAPVIASIDPSFRSRIWDD 368

Query: 368 NAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAE 427
               AH AI P   T    +L GM      +Y LI   ++A  M   + D T  S     
Sbjct: 369 KKITAHHAIIP---TPHKCNLAGMNEAERNVYTLIRTHYLAQFMPLLEMDVTRASFNIGG 425

Query: 428 YTLKAKGRILKFDGW-TRVQRPLGKNEDQ--------ILPPVKVGDSLKLVSLDPKQHFT 478
              +  GR+    GW T   +    + D+         LPP+       +   + K   T
Sbjct: 426 QLFRTSGRVTVVPGWKTLFGQAAASDSDERDDEAAAVSLPPLTKDAVCGIRGAELKALKT 485

Query: 479 KPPARYTEAALVKEL-----------------EKRGIGRPSTYASIISTIQDRGYVKVDQ 521
           KPP  Y+   L+  +                 +  G+G  +T A I+  +  RG++    
Sbjct: 486 KPPQPYSFKTLIAAMMNAAGLVDDPALKKVLRDNAGLGTEATRAGILDVLMKRGFLIKKG 545

Query: 522 RRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRD 581
               A    +   D +D     L     TA  E+ LD IA G++     LD F     R 
Sbjct: 546 NHLHA---SDTACDLVDALPAALTQVGMTALWEQALDDIAAGKM----TLDSF---VDRQ 595

Query: 582 LETAEQDESLGGMKPNHI-VMTNILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTT 640
           L    Q    G  +   I V     CP C     +R    G F GC  Y       CK  
Sbjct: 596 LRWVNQLVEQGKQQAFTIRVPERPKCPLCGGRTRLRKGPNGTFYGCENY-----PTCKGI 650

Query: 641 INLG 644
           ++ G
Sbjct: 651 VDSG 654



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 699 IVEEGE---FKVKGYEGPTVECDKCGSDMVLKNGRFGKYMGCTN-DACK 743
           +VE+G+   F ++  E P  +C  CG    L+ G  G + GC N   CK
Sbjct: 602 LVEQGKQQAFTIRVPERP--KCPLCGGRTRLRKGPNGTFYGCENYPTCK 648