Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 780 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  112 bits (280), Expect = 9e-29
 Identities = 131/522 (25%), Positives = 217/522 (41%), Gaps = 79/522 (15%)

Query: 92  QILP--GKEKVVAELQKLAKDADSVYLATDLDREGEAIA-WHLREIIGGDEKRYKRVVFN 148
           +I+P  G +K    ++ L   A  V    D  +EGE I  W L++     +   +R+  +
Sbjct: 74  KIIPDNGVKKQFKIIRDLVNKAQVVINCGDAGQEGELIQRWVLKQ--ANYQGAVQRLWIS 131

Query: 149 EITKNAIQQAFK--QPGELNMDGVNAQQARRFMDRVVGFMVSPLLWKKVA---RGLSAGR 203
            +T  +IQ  F+  +P E   +   A  +R   D ++G   + L   K     + LS GR
Sbjct: 132 SLTTESIQAGFENLKPAEEFDNLYYAGSSRAIGDWLLGMNATRLYTLKYGGYKQVLSIGR 191

Query: 204 VQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQKDGLAFKPVNETEAL 263
           VQ+  + +LV R +EI+ F PE +W++     T     F       +G   K  +    L
Sbjct: 192 VQTPTLAMLVNRHQEIEQFKPEPYWELQT---TYRDTTFH----STEGKFLKKEDGEALL 244

Query: 264 AAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEAG 323
             +   +     + ++E K    K    F  ++LQ   + +       T+   QRLYE  
Sbjct: 245 GQITGKDLFITAIDQKEGKEYAPK---LFDLTSLQVYCNNKFNLTADNTLKTVQRLYELK 301

Query: 324 YITYMRTDSTNLSAEAVENLRGYITKHYGEAY----------LPSQPNVYGSKQNAQEAH 373
            +TY R D+T L  +    + G I K  G+ +          +   P V+  K+     H
Sbjct: 302 VVTYPRVDTTFLPNDMYPKISG-ILKGLGQYHSFTAPLLAKKIRKSPKVFNDKKVTD--H 358

Query: 374 EAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTLKAK 433
            AI P+         E       K+Y +I  +F+A      +   T V+ +  + T  AK
Sbjct: 359 HAIIPTGEEKQLGHTE------QKVYDIIVRRFLAAFYPDCKVAKTQVTGEIEQTTFLAK 412

Query: 434 GRILKFDGWTRVQRPLGK-----------NEDQILPPVKVGDSLKLVSLDP-----KQHF 477
           G+ +  +GW  +     K            E+ ILP  + G+        P     K+  
Sbjct: 413 GKEILEEGWRALFAKDNKKEKDDGDSKEDEEEGILPTFEKGEH------GPHHPTLKEKI 466

Query: 478 TKPPARYTEAALVKELE----------------KRGIGRPSTYASIISTIQDRGYVKVDQ 521
           TKPP  YTEA+L++ +E                  GIGRPST ASII T+  R Y++  +
Sbjct: 467 TKPPKNYTEASLLRAMETAGKQVEDDELRDLMKANGIGRPSTRASIIETLFRRKYIERRK 526

Query: 522 RRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEG 563
           +     +MG  +   +      L + + T + E++L +I EG
Sbjct: 527 KLVVPTEMGIQLIGTIQNEL--LKSAELTGQWEKQLKEIEEG 566