Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 693 a.a., Topoisomerase IA from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  126 bits (316), Expect = 5e-33
 Identities = 142/567 (25%), Positives = 238/567 (41%), Gaps = 91/567 (16%)

Query: 96  GKEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAI 155
           G  K +  +++L   +D + +ATD  REGE I  ++ E +    K ++R+  + +T+ AI
Sbjct: 87  GAIKQLKIIEQLFNRSDGIIVATDAGREGELIFRYIYEYLKCI-KPFQRLWISSLTEKAI 145

Query: 156 QQAFKQPGE-LNMDGV-NAQQARRFMDRVVGFMVSPLLWKKVARGL-SAGRVQSVAVKLL 212
           +Q F    +    DG+  A Q R   D +VG   +  L      G+ S GRVQ+  + L+
Sbjct: 146 KQGFDNLKDGKEFDGLYQAAQGRSRADWLVGINATQALSIAAGNGVYSLGRVQTPTLALI 205

Query: 213 VEREREIKAFVPEEFWDINADTLTADKQDFRLLVAQK---DGLAFKPVNETEALAAVAAL 269
             R  E K F  +++W I     T +  +F+ L   K     LA   +   E     AA+
Sbjct: 206 CRRYLENKNFSVQKYWQIQLSH-TKEFIEFKSLSKNKWDNQKLAKDTLKSIERNGNTAAV 264

Query: 270 NKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTMMLAQRLYEAGYITYMR 329
                     E K  T +P   F  + LQ+  + +L    ++T+ +AQ LYE  +ITY R
Sbjct: 265 TSV-------ETKNVTEQPPLLFDLTGLQKEVNKKLNLSAEETLKIAQSLYEKKFITYPR 317

Query: 330 TDSTNLSAEAVENLRGYITKHYGEAYLPSQPNVYGSKQNAQEAHEAIRP----------- 378
           T S                K+  E      PN+  + Q+     +A+             
Sbjct: 318 TGS----------------KYIPEDMWTEIPNLIRALQDRDTCKQAVAKVKWGRFNKRIV 361

Query: 379 SDVTV-------TADDL-EGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVKAAEYTL 430
           +D+ V       T D +   + A  + +Y +I  + +         ++T ++++A  Y  
Sbjct: 362 NDLRVTDHHGLLTTDTIPSALNAKENAVYDMIAFRLLEAISGACTKEATHITLQALHYDF 421

Query: 431 KAKGRILKFDGWTRVQRPLGKNED---QILPPVKVGDSLKLVSLDPKQHFTKPPARYTEA 487
             KG  +   GW  ++     ++    + LP +K GD LK+      +  TKPP  YTEA
Sbjct: 422 TTKGCKVLEPGWRSIKGNFTDDDAEPIEDLPDIKEGDVLKIKQAAVLEKKTKPPVLYTEA 481

Query: 488 ALV----------------KELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMG- 530
            L+                K L+  GIG P+T A+II T+  R Y++ +++     + G 
Sbjct: 482 GLLSAMETAGKDIKNEEERKALQNIGIGTPATRAAIIETLFTRNYIQREKKSLIPTEKGL 541

Query: 531 ---EIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQ 587
              E+V DR       + +   TA  E  L +I   E+N  A        F +++E A  
Sbjct: 542 QVYELVKDR------KIADVAMTAEWELALQKIETSEMNAIA--------FQKEME-AYT 586

Query: 588 DESLGGMKPNHIVMTN---ILCPTCSR 611
               G +    I   N   ++CP C +
Sbjct: 587 KSITGELLQTSIAKDNSPELVCPKCKK 613