Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., DNA topoisomerase I, bacterial from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  437 bits (1123), Expect = e-126
 Identities = 261/631 (41%), Positives = 368/631 (58%), Gaps = 91/631 (14%)

Query: 1   MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKAST 60
           M K+LVIVESPAKAKTI  YLGKD+ V SS GHVRDLP   +                  
Sbjct: 1   MPKNLVIVESPAKAKTIEGYLGKDYKVTSSYGHVRDLPKGDKA----------------- 43

Query: 61  TDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDL 120
                               +D  + ++  Y++   K++V+ +L+K+ KD+D++YLA+D 
Sbjct: 44  --------------------IDIKNHFKPTYEVTSDKKEVIKQLKKMVKDSDTIYLASDD 83

Query: 121 DREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMD 180
           DREGEAI+WHL+E++  D  + KR+VF EITKNAI +A + P  +++D VNAQQARR +D
Sbjct: 84  DREGEAISWHLKEVLKLDNDKTKRIVFREITKNAITKAIENPRSIDIDLVNAQQARRILD 143

Query: 181 RVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQ 240
           R+VGF +SP+LWKKV  GLSAGRVQSVAV+ +VEREREI  F  +  + + A      K+
Sbjct: 144 RLVGFELSPVLWKKVKAGLSAGRVQSVAVRFIVEREREIDKFESKSSYKVTAIFNVKGKE 203

Query: 241 DFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQA 300
               L A+   L  K   + EA A +    +A + +   E KP    P+APF TSTLQQ 
Sbjct: 204 ----LNAE---LPKKFETQEEAEAFLKNCLEADFSIKNLEKKPAKKTPAAPFTTSTLQQE 256

Query: 301 ASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQP 360
           AS +L + V +TM LAQRLYEAG ITYMRTDS NLS EA+E+ +  I   +G  Y  S+ 
Sbjct: 257 ASRKLSFSVAQTMTLAQRLYEAGKITYMRTDSVNLSQEAMESAQNQIISAFGPEYHKSRK 316

Query: 361 NVYGSK-QNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDST 419
             Y SK + AQEAHEAIRP++     +++ G E +  +LY LIW + +A QM  A  + T
Sbjct: 317 --YTSKSEGAQEAHEAIRPTNFA--NEEISG-ERNEQRLYELIWKRAIASQMADALLEKT 371

Query: 420 --TVSVKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQ--------ILPPVKVGDSLKLV 469
             T+ +  ++ TL A G ++KF+G+ +V      +E++        +LPP+ +G  L L+
Sbjct: 372 LVTIGISNSDLTLSASGEVIKFEGFLKVYLESTDDEEEEENNDNKGLLPPLTIGQDLDLI 431

Query: 470 SLDPKQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYV------------ 517
            +  +Q FT+PPARYTEA+LVK+LE+ GIGRPSTYA  ISTIQ R YV            
Sbjct: 432 EMKSRQSFTRPPARYTEASLVKKLEEMGIGRPSTYAPTISTIQKRNYVIKESRDGKPRNY 491

Query: 518 -------------------KVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLD 558
                                D+ + F   +  +V D L ++F ++++Y FTA++E++ D
Sbjct: 492 TEMIIKDGSFSKAEKTENYGSDKNKLFPTNIAMVVNDFLVDHFPNVIDYKFTAKVEKEFD 551

Query: 559 QIAEGEVNWTAVLDEFFADFSRDLETAEQDE 589
            IA G   W  +++ F+  F   +E AE  E
Sbjct: 552 DIAHGIQQWDNMIENFYGKFHNTVEEAETVE 582