Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 782 a.a., type I DNA topoisomerase from Bacteroides stercoris CC31F

 Score =  424 bits (1091), Expect = e-123
 Identities = 263/623 (42%), Positives = 367/623 (58%), Gaps = 84/623 (13%)

Query: 1   MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKAST 60
           M K+LVIVESPAKAKTI K+LGKD+ V SS GH+RDL                  KK   
Sbjct: 1   MQKNLVIVESPAKAKTIEKFLGKDYKVLSSYGHIRDL------------------KK--- 39

Query: 61  TDKEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDL 120
                           K+  +D    ++ +Y+I   K+KVV EL+  AK+A++V+LA+D 
Sbjct: 40  ----------------KEFSIDIDKDFKPHYEIPGDKKKVVEELKAEAKEAETVWLASDE 83

Query: 121 DREGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMD 180
           DREGEAIAWHL E++    +  KR+VF+EIT++AI +A +QP  ++++ V+AQQARR +D
Sbjct: 84  DREGEAIAWHLYEVLKLQPEHTKRIVFHEITQSAILKAIEQPRNIDINLVDAQQARRILD 143

Query: 181 RVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQ 240
           R+VGF +SP+LWKKV   LSAGRVQSVAV+L+VEREREI+AF  E  + + A  L  D  
Sbjct: 144 RIVGFELSPVLWKKVKPALSAGRVQSVAVRLIVEREREIQAFQSEASYRVTAVFLVPDAD 203

Query: 241 DFRLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQA 300
                V  K  L+ +   + EA   + +   A + +     +P    P+APF TSTLQQ 
Sbjct: 204 G--KPVEMKAELSRRIKTKAEAQKFLESCRSASFTIHDISTRPLKKSPAAPFTTSTLQQE 261

Query: 301 ASTRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQP 360
           A+ +LG+ V +TMM+AQRLYE+G ITYMRTDS NLS  AV+N +  I    GE Y+   P
Sbjct: 262 AARKLGFTVAQTMMVAQRLYESGKITYMRTDSVNLSELAVDNSKAVIADMMGERYV--YP 319

Query: 361 NVYGSK-QNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDST 419
             + +K + AQEAHEAIRP+   +    +EG   +  KLY LIW + +A QM  A+ + T
Sbjct: 320 RHFATKTKGAQEAHEAIRPT--YMENAKIEGTPQE-RKLYDLIWKRTIASQMADAEVEKT 376

Query: 420 TVSVKAAEY--TLKAKGRILKFDGWTRVQRPL------GKNEDQILPPVKVGDSLKLVSL 471
           TVS+  +    T  A G ++KFDG+  V R         ++E ++LPP+K G  L   S+
Sbjct: 377 TVSIGISNEADTFNATGEVVKFDGFLHVYRESIDEDTEQEDETRLLPPLKKGQVLHHQSI 436

Query: 472 DPKQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVK------------- 518
              + FT+ P RYTEA+LV++LE+ GIGRPSTYA  ISTIQ RGYV+             
Sbjct: 437 IATERFTQHPPRYTEASLVRKLEELGIGRPSTYAPTISTIQQRGYVEKGEKSGEERSYNI 496

Query: 519 ------------------VDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQI 560
                              ++ +      G +V D L E F ++++Y+FTA +E++ D+I
Sbjct: 497 LSLQDSKITDVTQTEITGAEKAKLMPTDTGTVVNDFLMEYFPNILDYNFTASVEKQFDEI 556

Query: 561 AEGEVNWTAVLDEFFADFSRDLE 583
           AEGE  WTA+L +F+  F   +E
Sbjct: 557 AEGEKKWTAILKDFYKGFHPSVE 579