Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 724 a.a., DNA topoisomerase from Bacteroides ovatus ATCC 8483

 Score =  128 bits (321), Expect = 1e-33
 Identities = 137/533 (25%), Positives = 234/533 (43%), Gaps = 66/533 (12%)

Query: 95  PGKEKVVAELQKLAKDADSVYLATDLDREGEAIA-WHLREIIGGDEKRYKRVVFNEITKN 153
           P  EK    ++ L ++AD +    D  +EGE I  W +++   G     KR+  + +T+ 
Sbjct: 79  PTYEKQFHIIEGLMQNADEIINCGDAGQEGELIQRWVMQK--AGARCPVKRLWISSLTEE 136

Query: 154 AIQQAF-KQPGELNMDGV-NAQQARRFMDRVVGFMVSPLLWKKVARG---LSAGRVQSVA 208
           AI++ F K   + +   +  A  +R   D ++G   + L   K  +    LS GRVQ+  
Sbjct: 137 AIREGFAKLKDQTDFQSLYEAGLSRAMGDWLLGMNATRLYTIKYGQNKQVLSIGRVQTPT 196

Query: 209 VKLLVEREREIKAFVPEEFWDINAD----TLTA--DKQDFRLLVAQK--------DGLAF 254
           + L+V R+ EI  F P+++W++  +    T +A   K D  +   ++        D    
Sbjct: 197 LALIVNRQLEIANFEPKQYWELKTNYRDTTFSALIRKSDEEIAAEEEKNGGKKKIDNPGI 256

Query: 255 KPV-NETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAASTRLGYGVKKTM 313
            P+ N  E  A V  +    + V     K         F  ++LQ   + +  Y   +T+
Sbjct: 257 DPIANREEGEALVERIKDLPFVVTSVGKKDGREFAPRLFDLTSLQVECNKKFAYSADETL 316

Query: 314 MLAQRLYEAGYITYMRTDSTNLSAEA-------VENLRGY--ITKHYGEAYLPSQPNVYG 364
            L Q LYE    TY R D+T LS +        ++ LR Y  +T       LP    V+ 
Sbjct: 317 KLIQSLYEKKVATYPRVDTTFLSDDIYPKCPAILKGLRDYEVLTAPLAGTTLPKSKKVFD 376

Query: 365 SKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVSVK 424
           + +     H AI P+ V   A +L  ME    ++Y LI  +F+A      +  +TTV  +
Sbjct: 377 NSKVTD--HHAIIPTGVY--AQNLTDME---RRVYDLIARRFIAVFYPDCKISTTTVMGE 429

Query: 425 AAEYTLKAKGRILKFDGWT-----RVQRPLGKNEDQ---ILPPVKVGDSLKLVSLDPKQH 476
             +   +  G+ +   GW       V+ P  + E++   +LP    G+S   +  D  + 
Sbjct: 430 VDKIEFRVTGKQILEPGWRVVFAKDVKDPTEEKEEEDENVLPTFVKGESGPHIP-DLNEK 488

Query: 477 FTKPPARYTEAALVKELE----------------KRGIGRPSTYASIISTIQDRGYVKVD 520
           +T+PP  YTEA L++ +E                + GIGRPST A+II T+  R Y++ +
Sbjct: 489 WTQPPRPYTEATLLRAMETAGKLVDNDELRDALKENGIGRPSTRAAIIETLFKRNYIRKE 548

Query: 521 QRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDE 573
           ++   A   G  +   + E    L + + T   E+KL +I +   +    L+E
Sbjct: 549 RKNLIATPTGVELVQLIHEEL--LKSAELTGIWEKKLREIEKKTYDARQFLEE 599