Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 653 a.a., DNA topoisomerase III from Escherichia coli BL21

 Score =  102 bits (254), Expect = 7e-26
 Identities = 133/539 (24%), Positives = 221/539 (41%), Gaps = 81/539 (15%)

Query: 87  WQANYQILPGKEKVVAELQKLAKDADSVYLATDLDREGEAIAWHLREIIG-GDEKRYK-- 143
           WQ   Q  P   K +  +++   +A  +  A D DREG+ +   + + +    EKR +  
Sbjct: 73  WQL--QPRPSVTKQLNVIKRFLHEASEIVHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQ 130

Query: 144 RVVFNEITKNAIQQAFKQPGELN-----------------MDGVNAQQARRFMDRVVGFM 186
           R + N++   A+++A  +    +                 + G+N  +A   + R  G+ 
Sbjct: 131 RCLINDLNPQAVERAIDRLRSNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQ 190

Query: 187 VSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDFRLLV 246
                       LS GRVQ+  + L+V R+ EI+ FV ++F+++ A  +T   + F  + 
Sbjct: 191 GV----------LSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIW 240

Query: 247 AQKDGLAFKPVNETE--------ALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQ 298
              +  A +P  + E        A   V  ++     V    DK  +     PF  S LQ
Sbjct: 241 QPSE--ACEPYQDEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQ 298

Query: 299 QAASTRLGYGVKKTMMLAQRLYEA-GYITYMRTDSTNLSAEAVEN---LRGYITKHYGEA 354
             A+ R G   +  + + Q+LYE    ITY R+D   L  E       +   I+ H  + 
Sbjct: 299 IEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNAISVHAPD- 357

Query: 355 YLPSQPNVYGSKQN------AQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVA 408
            L  QP V    +N        +AH AI P+    +A +L   EA   K+Y LI  Q++ 
Sbjct: 358 -LLPQPVVDPDIRNRCWDDKKVDAHHAIIPT-ARSSAINLTENEA---KVYNLIARQYLM 412

Query: 409 CQMTPAQYDSTTVSVKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQ---ILPPVKVGDS 465
                A +    + +  A+    AK R L   GW  +     ++E+     LP V  GD 
Sbjct: 413 QFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLLGSKERDEENDGTPLPVVAKGDE 472

Query: 466 LKLVSLDPKQHFTKPPARYTEAALV------------KELEK-----RGIGRPSTYASII 508
           L     +  +  T+PP  +T+A L+            K+L+K      G+G  +T A II
Sbjct: 473 LLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGII 532

Query: 509 STIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNW 567
             +  RG++    R   +   G+ +   L E        D TA  E  L QI+E +  +
Sbjct: 533 ELLFKRGFLTKKGRYIHSTDAGKALFHSLPEM---ATRPDMTAHWESVLTQISEKQCRY 588