Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 892 a.a., DNA topoisomerase I from Agrobacterium fabrum C58

 Score =  418 bits (1075), Expect = e-121
 Identities = 251/668 (37%), Positives = 375/668 (56%), Gaps = 79/668 (11%)

Query: 4   SLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKASTTDK 63
           ++V+VESPAKAKTINKYLG  + V +S GHVRDLP                         
Sbjct: 2   NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLPA------------------------ 37

Query: 64  EQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLDRE 123
                        K   V P   ++ ++++     K + ++    K +D ++LATD DRE
Sbjct: 38  -------------KDGSVLPDQDFEMSWEVDSASAKRMKDIADAVKSSDGLFLATDPDRE 84

Query: 124 GEAIAWHLREIIGGD----EKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFM 179
           GEAI+WH+ +++       +K  KRVVFN ITK A+  A   P ++++  V+A  ARR +
Sbjct: 85  GEAISWHVLDLLKKKRVLGDKPVKRVVFNAITKKAVLDAMANPRDIDVPLVDAYLARRAL 144

Query: 180 DRVVGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADK 239
           D +VGF +SP+LW+K+    SAGRVQSVA++L+ +RE EI+ FV EE+W+I+A   T   
Sbjct: 145 DYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDRESEIERFVSEEYWNISALLKTPRG 204

Query: 240 QDFRLLVAQKDG--LAFKPVNETE-ALAAVAALNKAQYEVCKREDKPTTSKPSAPFITST 296
            +F   +   DG  L  + +   E A    A L  A Y V   E KP    P  PF TST
Sbjct: 205 DEFEAKLVSADGKRLQSRGIKTGEDANRLKALLEGATYVVDTVEAKPVKRNPGPPFTTST 264

Query: 297 LQQAASTRLGYGVKKTMMLAQRLYEA--------GYITYMRTDSTNLSAEAVENLRGYIT 348
           LQQAAS+R+G+G  +TM +AQ+LYE         G ITYMRTD   ++ EA++  R  I 
Sbjct: 265 LQQAASSRMGFGASRTMQVAQKLYEGIDIGGETVGLITYMRTDGVQIAPEAIDAARLAIG 324

Query: 349 KHYGEAYLPSQPNVYGSK-QNAQEAHEAIRPSDVTVTADDLEG-MEADAHKLYALIWNQF 406
           + +GE Y+P +   Y +K +NAQEAHEAIRP+D T T D ++  ++AD  +LY LIW + 
Sbjct: 325 EQFGERYVPEKARFYSTKAKNAQEAHEAIRPTDFTRTPDQVKRYLDADQLRLYDLIWKRG 384

Query: 407 VACQMTPAQYDSTTVSVKA----AEYTLKAKGRILKFDGWTRV---QRPLGKNEDQ---- 455
           +A QM  A+ + TTV + A     +  L+A G +++FDG+      Q+  G+  D     
Sbjct: 385 IASQMASAEIERTTVEILADKNGEKAGLRAVGSVIRFDGFIAAYTDQKEDGEQSDDGDDE 444

Query: 456 -ILPPVKVGDSLKLVSLDPKQHFTKPPARYTEAALVKELEKRGIGRPSTYASIISTIQDR 514
             LP +   ++L    ++  QHFT+PP RY+EA+L+K++E+ GIGRPSTYA+ + T+ DR
Sbjct: 445 GRLPQINARENLAKQKINASQHFTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSDR 504

Query: 515 GYVKVDQRRFFAEKMGEIVTDRLDENFDDLMNYDFTARMEEKLDQIAEGEVNWTAVLDEF 574
            Y+ +D+R+      G +VT  L+  F   + YDFTA +EEKLD+I+ GE++W  VL +F
Sbjct: 505 EYIVIDKRKLIPHSRGRLVTAFLESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRDF 564

Query: 575 FADFSRDLETAEQDESLGGMKPNHIVMTNI------------LCPTC-SRPMGIRTASTG 621
           + DF   +E  ++      +   + V+  +            +C  C +  + ++    G
Sbjct: 565 WKDFFAQIEDTKELRVTNVLDALNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKYG 624

Query: 622 VFLGCSGY 629
            F+GCS Y
Sbjct: 625 AFVGCSNY 632



 Score = 33.9 bits (76), Expect = 4e-05
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 717 CDKCGS-DMVLKNGRFGKYMGCTN-DACKNTRKILKNGEV--APPKEEPVHFPELPCENS 772
           C  CG+ ++ LK G++G ++GC+N   C  TR++  +G    A    EP      P    
Sbjct: 608 CQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGAEADAAASNEPKALGADPMTGE 667

Query: 773 DAYFVLRDGASGLFFAASNFPKSRETRAP 801
           +    LR G  G +    +  +++ +  P
Sbjct: 668 E--LTLRSGRFGPYIQRGDGKEAKRSSLP 694