Pairwise Alignments

Query, 876 a.a., DNA topoisomerase 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 880 a.a., DNA topoisomerase 1 from Acinetobacter radioresistens SK82

 Score = 1087 bits (2810), Expect = 0.0
 Identities = 542/866 (62%), Positives = 669/866 (77%), Gaps = 13/866 (1%)

Query: 3   KSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQTATPTGKAAAASTKKASTTD 62
           ++LVIVESPAKAKTINKYLG  +IVKSSVGHVRDLPT G +A  T K  AA TK      
Sbjct: 23  RALVIVESPAKAKTINKYLGSQYIVKSSVGHVRDLPTGG-SAKNTDKKPAARTKLT---- 77

Query: 63  KEQQKREKERAALIKKMGVDPYHGWQANYQILPGKEKVVAELQKLAKDADSVYLATDLDR 122
            E  K +K + ALI +MGVDP HGW+A+Y++LPGKE VV+EL+KLA   D +YLATDLDR
Sbjct: 78  -EADKAKKAQQALINRMGVDPEHGWEAHYEVLPGKENVVSELKKLASQVDEIYLATDLDR 136

Query: 123 EGEAIAWHLREIIGGDEKRYKRVVFNEITKNAIQQAFKQPGELNMDGVNAQQARRFMDRV 182
           EGEAIAWHL+E+IGGD+ RY+RVVFNEITKNAIQ+AFKQPG L+ + V+AQQARRF+DRV
Sbjct: 137 EGEAIAWHLKEVIGGDDSRYQRVVFNEITKNAIQEAFKQPGRLDTNKVHAQQARRFLDRV 196

Query: 183 VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDINADTLTADKQDF 242
           VGFM+SPLLW+K+ARGLSAGRVQSVAVKL+VEREREI+AF+PEE+W + ADTL+  K   
Sbjct: 197 VGFMISPLLWEKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWQVFADTLSK-KDQI 255

Query: 243 RLLVAQKDGLAFKPVNETEALAAVAALNKAQYEVCKREDKPTTSKPSAPFITSTLQQAAS 302
           RL   ++ G   K  N+ +    +  L K+++ V +REDKPT   PSAP+ITSTLQQAAS
Sbjct: 256 RLEAVKQAGKTLKLKNKAQTDTLLEVLKKSEFTVAQREDKPTKVNPSAPYITSTLQQAAS 315

Query: 303 TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVENLRGYITKHYGEAYLPSQPNV 362
           TRLG+ VKKTMMLAQRLYE G+ITYMRTDST LS +A++ +R +I   YG+ YLP++PN 
Sbjct: 316 TRLGFSVKKTMMLAQRLYEGGFITYMRTDSTFLSDDAIKMVRNHIESEYGDKYLPAKPNR 375

Query: 363 YGSKQNAQEAHEAIRPSDVTVTADDLEGMEADAHKLYALIWNQFVACQMTPAQYDSTTVS 422
           YGSK  AQEAHEAIRPS V +  D L G+E DA +LY LIW QFVACQMTPA+Y S+T++
Sbjct: 376 YGSKAGAQEAHEAIRPSSVELKGDQLAGVERDAQRLYDLIWRQFVACQMTPAEYLSSTLT 435

Query: 423 VKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQILPPVKVGDSLKLVSLDPKQHFTKPPA 482
           V A++  LKAKGRIL FDG+T+++     ++D +LP VKVG+ LKL  LDP QHFTKPPA
Sbjct: 436 VAASDVELKAKGRILVFDGFTKIRGANKSDDDVLLPAVKVGEVLKLEKLDPSQHFTKPPA 495

Query: 483 RYTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFFAEKMGEIVTDRLDENFD 542
           R+TEA+LVKELEKRGIGRPSTYA+IISTIQDRGYVK++ RR +AEKMGEIVTDRLDE+F+
Sbjct: 496 RFTEASLVKELEKRGIGRPSTYAAIISTIQDRGYVKLENRRLYAEKMGEIVTDRLDESFN 555

Query: 543 DLMNYDFTARMEEKLDQIAEGEVNWTAVLDEFFADFSRDLETAEQDESLGGMKPNHIVMT 602
           +LMNY FTA +E +LD++A GE NW  +LD F+ DF + L  A+ D+ +   +P  + + 
Sbjct: 556 NLMNYAFTADLEGQLDKVATGERNWKELLDSFYGDFKQRLNNAQGDQGMRRNQP--VEVP 613

Query: 603 NILCPTCSRPMGIRTASTGVFLGCSGYGLPPKERCKTTINLGDEEGVINVLEED-VETAA 661
           ++ CP C RPM IRT +TGVFLGCSGY LPPKERCK T+NL   E +  + ++D  ETA 
Sbjct: 614 DVHCPECDRPMQIRTGTTGVFLGCSGYNLPPKERCKGTLNLVPVESLAALSDDDGAETAD 673

Query: 662 LRAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCEGFIVEEGEFKVKGYEGPTVECDKCG 721
           L +KKRC IC TAMD+Y+ID  RKLH+CGNNP+C+G+ VEEGEFK+KGY+GPT+ CDKC 
Sbjct: 674 LMSKKRCLICGTAMDSYVIDGGRKLHICGNNPDCDGYEVEEGEFKIKGYDGPTIPCDKCD 733

Query: 722 SDMVLKNGRFGKYMGCTNDACKNTRKILKNGEVAPPKEEPVHFPELPCENSDAYFVLRDG 781
            +M LK GRFG Y  C N  C NTRK+LKNG+ APP+ +P+    L     D YFVLRDG
Sbjct: 734 GEMQLKTGRFGPYFACNN--CDNTRKVLKNGQPAPPRVDPIKMEHLRSTKHDDYFVLRDG 791

Query: 782 ASGLFFAASNFPKSRETRAPLVEELKRFAERLPEKYQYLTSAPAHDPDGLPAVVRFSRKE 841
           A+GLF AAS FPK RETRAP V EL+  A +L  KYQ+L  AP  DP+G P VV+FSRK 
Sbjct: 792 AAGLFLAASKFPKIRETRAPKVAELRTVAGQLDPKYQFLLQAPDTDPEGNPTVVKFSRKN 851

Query: 842 KEHYVRTET-EGKPSGWMAVYQEGKW 866
           ++ Y+ +ET EGK + W  V+Q GKW
Sbjct: 852 QQQYIGSETPEGKQTKWSLVFQSGKW 877