Pairwise Alignments

Query, 818 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 964 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  225 bits (573), Expect = 1e-62
 Identities = 161/565 (28%), Positives = 272/565 (48%), Gaps = 44/565 (7%)

Query: 130 ALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHSQHFYVDMWQ 189
           ++FD     + ITD +  I++ N+ F + TGY+  EL+G   ++  SG+H   FY +MW+
Sbjct: 394 SVFDGTSEAIAITDAEGLIVSVNKPFCRLTGYELEELVGRNPNILKSGRHDSDFYAEMWR 453

Query: 190 QLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFY-IGFTTDLAPH--LDRVLDK 246
            +   G WSG + ++R +GEV+P+ L+I  +   KGQI   +   +D+      + ++  
Sbjct: 454 SITATGNWSGEVWNRRKNGEVYPERLTISTIYDAKGQIQRRVAIASDITEQKKAEEIIWH 513

Query: 247 QAGDVELLTQLPTLSKFSDQLKQRLPKQQT----TTGFVLAIQPKFSS----------DK 292
           QA   +LLT LP   +F D L++ L +  +      G +L    +F            D+
Sbjct: 514 QANH-DLLTGLPNRRRFLDLLRKDLARADSLPDMVVGVLLIDLDRFKEVNDTLGHAIGDQ 572

Query: 293 YYAQIRRLAASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQ 352
              ++ R   S    + V   G+ G   F+  +  +  L    L      +R    E  +
Sbjct: 573 LLLEVARRIRSCLSEKDV--IGHLGADEFIVSMIDD--LSTTRLEAAVAAIRMVIAEPFR 628

Query: 353 RGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQI 412
            G    H   +   +G++    D   +E L+ +  QA+ E   G       +  ++ +  
Sbjct: 629 SGSDTLHLTAS---IGITAYPTDGGDMEELLRNVDQAVREAKNGGRDRSCCFTESMREAG 685

Query: 413 ERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIA 472
           + R  L   +++ ++ G  EV+YQPI+D  S ++VK EAL R++ PE    S    I IA
Sbjct: 686 QTRLQLANDLREALSEGQFEVYYQPIIDMPSRAIVKAEALLRWRHPERGFVSPTIFIPIA 745

Query: 473 EDLGLINQLDELIGGKALKDLPKIHALFGHHVG------------------VSINRSLNS 514
           E+ GLI  +   +  +A     ++     + VG                  +++N+S   
Sbjct: 746 EETGLICDIGNWVFRQAAATARRLCDSCRYVVGGICRKDDIAGPSTPCRFQIAVNKSPRQ 805

Query: 515 DLSAEQILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDF 574
             S    L+   + L E     + I++E+TE       ++  E L   R  G+ +A+DDF
Sbjct: 806 FFSGFSHLEWA-EHLRELNISPQCISIEVTEGLLLGQHAEVMERLTKFRAAGMQIALDDF 864

Query: 575 GTGFSSFSYLTECQFDYLKIDREFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETE 634
           GTG+S+ SYL     DY+KID+ FV ++ V S   AI + +  +AH LG+KVVAEG+ETE
Sbjct: 865 GTGYSAMSYLKRFDIDYIKIDQSFVRDMTVDSSDRAIAEAIIAMAHRLGMKVVAEGIETE 924

Query: 635 HEVYVLKSLGVDLLQGFFFAKPLPL 659
            +  +L + G D  QG+ FAKP+P+
Sbjct: 925 EQYALLAAAGCDFGQGYLFAKPMPV 949