Pairwise Alignments

Query, 262 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 623 a.a., Dipeptide transport ATP-binding protein DppD in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  194 bits (494), Expect = 3e-54
 Identities = 103/252 (40%), Positives = 159/252 (63%), Gaps = 5/252 (1%)

Query: 4   LLEVTNLHKDFVTRSGFLRKQIQ--HAVKPVSFTLEAGQTIGFIGQNGSGKSTLARMLAG 61
           +L+V  L   F  RSG   +  +  HAV+ +SF L  G+T+  +G++GSGKST  R L  
Sbjct: 313 ILQVRGLVTRFPLRSGLFNRVTREVHAVENISFDLWPGETLSLVGESGSGKSTTGRALLR 372

Query: 62  MVAPTGGEIRVNGELLEHKDYSTRCKL---IRMIFQDPNTSLNPRLQIGTILEGPLKRNT 118
           +V    GEI  NG+ ++         L   I+ IFQDP  SL+PR  +G  +  PL+ + 
Sbjct: 373 LVESRQGEIIFNGQRIDTLSAGKLQPLRRDIQCIFQDPYASLDPRQTVGYSIMEPLRIHG 432

Query: 119 SMTPEARMRRVKDTLQRVGLLPEHAYFYPQMLATGQKQRVCLARALILQPSIIIADEALN 178
               +A  +RV   L+RVGL PEHA+ YP   + GQ+QR+C+ARAL L P +IIADEA++
Sbjct: 433 LGQGDAAAKRVAWLLERVGLRPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVS 492

Query: 179 GLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVESGETHEVL 238
            LD+++R QI+NL L+LQ EMG++++++S  + V++ I+ ++ VM+ G +VE G    V 
Sbjct: 493 ALDVSVRGQIINLLLDLQREMGIAYLFISHDMAVVERISHRVAVMYLGQIVEMGPRRAVF 552

Query: 239 ADPQHPITQRMI 250
            +PQHP T++++
Sbjct: 553 ENPQHPYTRKLM 564



 Score =  142 bits (358), Expect = 2e-38
 Identities = 77/239 (32%), Positives = 130/239 (54%), Gaps = 16/239 (6%)

Query: 28  AVKPVSFTLEAGQTIGFIGQNGSGKSTLARMLAGMVAPTGGEIRVNGELLEHKDYST--- 84
           AV+ VS  L+ G+T+  +G++GSGKS  A  L  ++  +G  +R    LL  ++      
Sbjct: 31  AVRNVSLRLKRGETLAIVGESGSGKSVTALALMRLIEQSGANVRCGEMLLRRRNRQVIEL 90

Query: 85  -----------RCKLIRMIFQDPNTSLNPRLQIGTILEGPLKRNTSMTPEARMRRVKDTL 133
                      R   I MIFQ+P TSLNP   +G  +   ++ +   + E  +   K  L
Sbjct: 91  SEQSDAQMRRVRGADIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASHEEALAEAKRML 150

Query: 134 QRVGLLPEHAYF--YPQMLATGQKQRVCLARALILQPSIIIADEALNGLDMAMRSQILNL 191
            +V +    A    YP  L+ G +QRV +A AL  +P+++IADE    LD+ +++QIL L
Sbjct: 151 DQVRIPESQAILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210

Query: 192 FLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVESGETHEVLADPQHPITQRMI 250
              LQ+EM +  ++++  +GV+  I D+++VM++G+ VE+G   ++   P HP TQ ++
Sbjct: 211 IKVLQQEMSMGVIFITHDMGVVADIADRVLVMYQGEAVETGSVEQIFHAPTHPYTQTLL 269