Pairwise Alignments

Query, 262 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., D-ala-D-ala transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  178 bits (451), Expect = 1e-49
 Identities = 89/251 (35%), Positives = 156/251 (62%), Gaps = 12/251 (4%)

Query: 4   LLEVTNLHKDFVTRSGFLRKQIQH--AVKPVSFTLEAGQTIGFIGQNGSGKSTLARMLAG 61
           LL + ++H +F  R  +L K  +H  A+  +   +  G+T+G +G++G GKSTLA++L G
Sbjct: 5   LLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGETLGIVGESGCGKSTLAQLLMG 64

Query: 62  MVAPTGGEIRVNGELLEHKDYSTRCKLIRMIFQDPNTSLNPRLQIGTILEGPLKRNTSMT 121
           M+ P+ G+   +G            ++++M+FQDP +SLNPRL +  I+  PL      +
Sbjct: 65  MLQPSHGQYIRSGSQ----------RIMQMVFQDPLSSLNPRLPVWRIITEPLWIAKRSS 114

Query: 122 PEARMRRVKDTLQRVGLLPEHAYFYPQMLATGQKQRVCLARALILQPSIIIADEALNGLD 181
            + R    ++   +VG+ PE+    P   + GQ+QR+ +ARAL  QP +I+ DE  + LD
Sbjct: 115 EQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQPDVIVLDEPTSALD 174

Query: 182 MAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVESGETHEVLADP 241
           +++++QILNL + LQE  G+++V +S ++ VI+H++D++ VM+ G +VE G+  +VL  P
Sbjct: 175 ISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYLGQIVELGDAQQVLTAP 234

Query: 242 QHPITQRMIES 252
            HP T+ +++S
Sbjct: 235 AHPYTRLLLDS 245