Pairwise Alignments

Query, 262 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., oligopeptide transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  177 bits (449), Expect = 3e-49
 Identities = 102/257 (39%), Positives = 157/257 (61%), Gaps = 8/257 (3%)

Query: 4   LLEVTNLHKDFVTRSG----FLRKQIQHAVKPVSFTLEAGQTIGFIGQNGSGKSTLARML 59
           LLE+ +L   F  + G    +   +   AV  V+  L  G+T+G +G++G GKST AR +
Sbjct: 11  LLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAI 70

Query: 60  AGMVAPTGGEIRVNG-ELLEHKDYSTRCKL--IRMIFQDPNTSLNPRLQIGTILEGPLKR 116
            G+V  T G +   G ELL  K    R     I+MIFQDP  SLNPR+ IG I+  PL+ 
Sbjct: 71  IGLVKATDGHVAWLGKELLGMKPDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT 130

Query: 117 -NTSMTPEARMRRVKDTLQRVGLLPEHAYFYPQMLATGQKQRVCLARALILQPSIIIADE 175
            +  M+ +    RVK  + +VGLLP     YP   + GQ QR+ +ARALIL+P +II DE
Sbjct: 131 YHPKMSRQEVRERVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE 190

Query: 176 ALNGLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVESGETH 235
            ++ LD+++++Q++NL  +LQ EMG+S ++++  + V+KHI+D+++VM+ G  VE G   
Sbjct: 191 PVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYD 250

Query: 236 EVLADPQHPITQRMIES 252
           EV  +P HP T+ ++ +
Sbjct: 251 EVYHNPLHPYTRALMSA 267