Pairwise Alignments

Query, 262 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  179 bits (453), Expect = 2e-49
 Identities = 96/264 (36%), Positives = 157/264 (59%), Gaps = 6/264 (2%)

Query: 4   LLEVTNLHKDFVTRSGFLRKQIQH--AVKPVSFTLEAGQTIGFIGQNGSGKSTLARMLAG 61
           LL V +L   F  R     K      AV+ VSF + AG+T+  +G++GSGKST+ R +  
Sbjct: 304 LLSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQ 363

Query: 62  MVAPTGGEIRVNGELLEHKDYSTRCKL---IRMIFQDPNTSLNPRLQIGTILEGPLKRNT 118
           +     GEI  NG        + R ++   ++ IFQDP  SL+PR  +G  +  P+  + 
Sbjct: 364 LQTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTHG 423

Query: 119 SMTPE-ARMRRVKDTLQRVGLLPEHAYFYPQMLATGQKQRVCLARALILQPSIIIADEAL 177
            +  + A  RRV + L+RVGL  EHA  YP   + GQ+QRVC+ARAL   P +IIADEAL
Sbjct: 424 LINDQKAVRRRVDELLERVGLSSEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEAL 483

Query: 178 NGLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVESGETHEV 237
           + LD+++++QI+NLF++LQ E G++++++S  + V++ ++ ++ V++ G ++E G   +V
Sbjct: 484 SALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQV 543

Query: 238 LADPQHPITQRMIESHFTKAPTFK 261
              P H  T+R++ +     PT +
Sbjct: 544 FETPTHDYTRRLLSAVPVADPTIE 567



 Score =  143 bits (360), Expect = 1e-38
 Identities = 91/263 (34%), Positives = 142/263 (53%), Gaps = 22/263 (8%)

Query: 2   SALLEVTNLHKDFVTRSGFLRKQIQHAVKPVSFTLEAGQTIGFIGQNGSGKST------- 54
           +ALL V  L  +F              V  +SF +E G+T+  +G++GSGKS        
Sbjct: 7   NALLSVEGLSVEFGD---------SRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMR 57

Query: 55  LARMLAGMVAPTGGEIRVNGELLEHKDY---STRCKLIRMIFQDPNTSLNPRLQIGTILE 111
           LA M+ G   PTG  +    +LL+       S R K I MIFQ+P TSLNP   IG  + 
Sbjct: 58  LADMM-GATYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQIC 116

Query: 112 GPLKRNTSMTPEARMRRVKDTLQRVGL--LPEHAYFYPQMLATGQKQRVCLARALILQPS 169
             L  +  +   A M + K  L  V L    E  + YP  L+ G +QRV +A AL  +P 
Sbjct: 117 EVLVLHEKLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPK 176

Query: 170 IIIADEALNGLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVV 229
           ++IADE    LD+ +++QILN+  +LQ+++G+  V+++  +GV+  + D ++VM +G  V
Sbjct: 177 LLIADEPTTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKV 236

Query: 230 ESGETHEVLADPQHPITQRMIES 252
           E G   ++ A+PQHP T+ ++ +
Sbjct: 237 EEGPVKDIFANPQHPYTRALLSA 259