Pairwise Alignments

Query, 262 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  177 bits (449), Expect = 5e-49
 Identities = 85/254 (33%), Positives = 156/254 (61%), Gaps = 5/254 (1%)

Query: 4   LLEVTNLHKDFVTRSGFLRKQ--IQHAVKPVSFTLEAGQTIGFIGQNGSGKSTLARMLAG 61
           +L V +L   F  RSG   ++    HAV+ VSF L  G+T+  +G++G GKST  R +  
Sbjct: 314 ILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITR 373

Query: 62  MVAPTGGEIRVNGE---LLEHKDYSTRCKLIRMIFQDPNTSLNPRLQIGTILEGPLKRNT 118
           ++ PT G + ++G     L+     T  + ++M+FQDP  SL+PR+ +GT +  P   + 
Sbjct: 374 LIEPTSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEHR 433

Query: 119 SMTPEARMRRVKDTLQRVGLLPEHAYFYPQMLATGQKQRVCLARALILQPSIIIADEALN 178
                    +  D L++VGL P+    +P   + GQ+QR+ +AR+L+L P +I+ADEA++
Sbjct: 434 LGQKAQAREKAADLLEKVGLSPDMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVS 493

Query: 179 GLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVESGETHEVL 238
            LD+++++Q+ NL L+LQ+ + ++F+++S  + V++ ++ ++ VM+ G++VE G    V 
Sbjct: 494 ALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVF 553

Query: 239 ADPQHPITQRMIES 252
            +PQHP T++++ +
Sbjct: 554 DNPQHPYTKKLMSA 567



 Score =  140 bits (353), Expect = 6e-38
 Identities = 87/262 (33%), Positives = 143/262 (54%), Gaps = 15/262 (5%)

Query: 1   MSALLEVTNLHKDFVTRSGFLRKQIQHAVKPVSFTLEAGQTIGFIGQNGSGKS----TLA 56
           +S +L V NL   F    G+     +  V+ +SF +   +T+  +G++GSGKS    ++ 
Sbjct: 15  VSPVLSVQNLTTSFRVDGGW-----KSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIM 69

Query: 57  RMLAGMVAPTGGEIRVNGE----LLEHKDYSTRCKLIRMIFQDPNTSLNPRLQIGTILEG 112
           R+L    +   G++ + G     L E +    R K I MIFQ+P TSLNP   IG  +  
Sbjct: 70  RLLDRKTSRIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAE 129

Query: 113 PLKRNTSMTPEARMRRVKDTLQRVGLLPEHAYF--YPQMLATGQKQRVCLARALILQPSI 170
            L  +  ++  A    V   L++V +    + F  YP   + G +QRV +A AL  +P +
Sbjct: 130 ALTVHQDISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKL 189

Query: 171 IIADEALNGLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVE 230
           +IADE    LD+ ++ QIL+L  +LQEE G+S ++++  +GV+  + D+ IVM  GDVVE
Sbjct: 190 LIADEPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVE 249

Query: 231 SGETHEVLADPQHPITQRMIES 252
           +G T ++    QHP T+ ++ +
Sbjct: 250 TGTTDDIFHRGQHPYTRALLSA 271