Pairwise Alignments

Query, 262 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 611 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  188 bits (477), Expect = 3e-52
 Identities = 94/252 (37%), Positives = 157/252 (62%), Gaps = 5/252 (1%)

Query: 4   LLEVTNLHKDFVTRSGFLRKQIQ--HAVKPVSFTLEAGQTIGFIGQNGSGKSTLARMLAG 61
           +L+V  L K F   SG L +     HAV+ VSF L AG+T+  +G++G GKST  R +  
Sbjct: 311 VLKVEGLTKRFDIHSGLLGRLSGRVHAVENVSFDLRAGETLSLVGESGCGKSTTGRAIMR 370

Query: 62  MVAPTGGEIRVNGE---LLEHKDYSTRCKLIRMIFQDPNTSLNPRLQIGTILEGPLKRNT 118
           ++ P  G + VNGE    L+        K ++MIFQDP  SLNPR+ +G  +  P   + 
Sbjct: 371 LIEPDAGSVVVNGENILTLDKSGMREMRKTVQMIFQDPFASLNPRMTVGAAIAEPFLEHR 430

Query: 119 SMTPEARMRRVKDTLQRVGLLPEHAYFYPQMLATGQKQRVCLARALILQPSIIIADEALN 178
             +       V D L +VGL P+ A  YP   + GQ+QR+C+ARAL LQP +I+ADE+++
Sbjct: 431 MGSAREAKEVVADMLNKVGLSPDMAARYPHEFSGGQRQRICIARALALQPKVIVADESVS 490

Query: 179 GLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVESGETHEVL 238
            LD+++++Q++NL L+LQ+ + ++F+++S  + V++ ++ ++ VM+ G++VE G   +V 
Sbjct: 491 ALDVSIKAQVINLMLDLQQSLDLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRADVF 550

Query: 239 ADPQHPITQRMI 250
            +PQH  T++++
Sbjct: 551 DNPQHDYTRKLM 562



 Score =  133 bits (335), Expect = 8e-36
 Identities = 89/261 (34%), Positives = 139/261 (53%), Gaps = 17/261 (6%)

Query: 3   ALLEVTNLHKDFVTRSGFLRKQIQHAVKPVSFTLEAGQTIGFIGQNGSGKS----TLARM 58
           A+L V NL   F    G+     +  V+ +SF +  G+T+  +G++GSGKS    ++ R+
Sbjct: 14  AVLSVRNLTTSFHVDGGW-----KPVVRDISFDVGPGETVAIVGESGSGKSVTSLSIMRL 68

Query: 59  LAGMVAPTGGEIRVNGE----LLEHKDYSTRCKLIRMIFQDPNTSLNPRLQIGT-ILEGP 113
           L    +   GEI + G     L E      R   + MIFQ+P TSLNP   IG  I E  
Sbjct: 69  LDRESSRVQGEILLGGRNLLSLSEDAMRRVRGNEVAMIFQEPMTSLNPLFTIGDQISEAL 128

Query: 114 LKRNTSMTPEARMRRVKDTLQRVGLLPEHAYF--YPQMLATGQKQRVCLARALILQPSII 171
           L        EAR   V+  L++V +    + F  YP   + G +QRV +A AL  +P ++
Sbjct: 129 LCHQPMSKAEARAETVR-LLEKVRIPSAASRFDEYPHRFSGGMRQRVMIAMALASKPKLL 187

Query: 172 IADEALNGLDMAMRSQILNLFLELQEEMGVSFVYVSQHIGVIKHITDKIIVMHEGDVVES 231
           IADE    LD+ ++ QIL+L   LQEE G S ++++  +GV+  I D+ +VM+ G+ VE 
Sbjct: 188 IADEPTTALDVTIQGQILDLIKTLQEEEGTSVLFITHDMGVVAEIADRTVVMYRGEQVEV 247

Query: 232 GETHEVLADPQHPITQRMIES 252
           G T ++    +HP T+ ++ +
Sbjct: 248 GATADIFHRGKHPYTRALLSA 268