Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  208 bits (530), Expect = 1e-58
 Identities = 120/307 (39%), Positives = 173/307 (56%), Gaps = 9/307 (2%)

Query: 3   LLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKEN-W 61
           LLD++ LT+   TP G + AVDR+S  +  GE   +VGESG GKS+ A A++ + +    
Sbjct: 6   LLDVKDLTVRFRTPAGRLTAVDRLSFDIAAGETLAIVGESGCGKSVTAMALLRLLRSPPA 65

Query: 62  RVTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRTF 121
            ++   +R    +LL L+ R  R V    +AMIFQ+P + L+P   V  Q+IES+   T 
Sbjct: 66  EISGSHVRFEGTELLALSERAMRDVRGNRIAMIFQDPLSALNPVRTVADQIIESLKRHT- 124

Query: 122 EGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPKLLI 181
                 R     ++A+ LL  V I + +     YP+  + G  Q+VMIA+AIAA P+LLI
Sbjct: 125 ----GLRGPALHRRAVELLDLVRIPEPQRRADDYPHHFSGGMRQRVMIAIAIAANPRLLI 180

Query: 182 ADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQSVESA 241
           ADEPT  +D   Q+QIL+L+  + +    S+LLI HDL  + + ADR+ VMY G+ VE  
Sbjct: 181 ADEPTTALDVTVQAQILKLIVSLQKEFGMSLLLISHDLGVVAETADRVLVMYAGRKVEER 240

Query: 242 ETAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGPRCPYA 301
             A + A P HPYT AL++A P        ++ L  +PG +P L  LP GC   PRC +A
Sbjct: 241 PVADLFARPLHPYTRALMRARPTPG---LRRELLDEIPGIVPSLADLPPGCAFAPRCAHA 297

Query: 302 QRQCVEV 308
              C  +
Sbjct: 298 DEACARL 304