Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  189 bits (479), Expect = 1e-52
 Identities = 123/310 (39%), Positives = 167/310 (53%), Gaps = 16/310 (5%)

Query: 2   PLLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENW 61
           PL+D+R L+I           V  +SLT+  GE   LVGESGSGKSL A A++ +  +  
Sbjct: 3   PLIDVRDLSIAFPR----ATPVRGLSLTVEAGETVALVGESGSGKSLTALALMRLLPDTA 58

Query: 62  RVTADRMRL-----GNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESI 116
           R+ +  +       G  DL +L  R  RRV  RD+AM+FQEP T L+P   VG+Q+ E +
Sbjct: 59  RIASGEILFRGRDGGVTDLARLEDRALRRVRGRDIAMVFQEPMTSLNPVLSVGQQVAEVV 118

Query: 117 PFRTFEGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAK 176
             R  EG        R   A+ LL  V I + +  +  YP+EL+ G  Q+VMIA+A+A  
Sbjct: 119 --RLHEGLSRRAAFAR---AVELLDLVRIPEPRRRVGDYPHELSGGMRQRVMIAIAVACT 173

Query: 177 PKLLIADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQ 236
           P+LLIADEPT  +D   Q+Q+L LL  + +  +  +LLI HDL  + +WADR+ VMY G+
Sbjct: 174 PRLLIADEPTTALDVTIQAQVLDLLDALRRDLSMGLLLITHDLGVVAEWADRVAVMYAGR 233

Query: 237 SVESAETAKIVAEPKHPYTAALLKAMPDFSDWIPHKQ-KLQSLPGSIPPLQHLPIGCRLG 295
            VE A    +   P HPYT  LL A P       +    L  + GSI        GC   
Sbjct: 234 KVEDAPFETLFGAPLHPYTRGLLAASPRLDAGQHYSAGALAEIQGSIASAAG-EEGCAFA 292

Query: 296 PRCPYAQRQC 305
           PRCP A+  C
Sbjct: 293 PRCPSARALC 302