Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  191 bits (485), Expect = 5e-53
 Identities = 109/309 (35%), Positives = 170/309 (55%), Gaps = 16/309 (5%)

Query: 1   MPLLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKEN 60
           +P L++R+L     T  G++  VD +S T+  G++ GLVGESGSGKS+   +I+G+    
Sbjct: 11  VPTLEVRNLQTRFHTRAGVLPVVDGVSFTLGRGKVLGLVGESGSGKSVTGFSIMGLVDPP 70

Query: 61  WRVTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFR- 119
            +V   ++     +L QL   ERR +    +AMIFQ+P   L+P   V  Q+IE++    
Sbjct: 71  GKVEGGQVLFQGRELTQLPAIERRELRGNRIAMIFQDPMATLNPVLRVDTQMIEAVKAHK 130

Query: 120 ---TFEGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAK 176
              T E R   R T         L  +GI   ++ + +YP++L+ G  Q+V IA+A+   
Sbjct: 131 RVSTEEARRHARDT---------LGLMGIPSPEERLRAYPHQLSGGMRQRVAIAIAMLHG 181

Query: 177 PKLLIADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQ 236
           P L+IADEPT  +D   Q+QIL  + ++ +   TS++ I HDL+ +   AD I VMY G+
Sbjct: 182 PDLIIADEPTTALDVTIQAQILSEVQKLVRETGTSLIWISHDLSVVASLADEIAVMYAGR 241

Query: 237 SVESAETAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGP 296
            VE    A ++  P+HPYT  L+ ++P  ++      +L+ + G  P L  +P GC   P
Sbjct: 242 IVEHGTVADVLDHPQHPYTRGLIDSLPSANE---RGARLRQIQGMTPSLLKMPAGCAFAP 298

Query: 297 RCPYAQRQC 305
           RCP+A   C
Sbjct: 299 RCPHADAAC 307



 Score =  147 bits (370), Expect = 1e-39
 Identities = 99/315 (31%), Positives = 149/315 (47%), Gaps = 17/315 (5%)

Query: 10  TIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENWRVTADRMR 69
           ++ +  P  +  AVD + L++  GE+ GLVGESG GKS + +   G+       T   + 
Sbjct: 384 SVGLSKPPVVTHAVDVVDLSVRPGEVVGLVGESGCGKSTLGRIAAGLLTP----TEGEVI 439

Query: 70  LGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRTFEGRWWERF 129
           +G   +  L+ +E+     R + M+FQ+P   L+P   V R + E+              
Sbjct: 440 VGGKPVASLSAQEQLAARLR-IQMVFQDPYASLNPRLRVSRIVGEAAMLHGLTDA----- 493

Query: 130 TWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPKLLIADEPTNDV 189
             +     A L + G+     +   YP++ + G+ Q++ IA A+A +P +L+ DE    +
Sbjct: 494 AGQDDYVCAQLERAGLDPA--LRHRYPHQFSGGQRQRIGIARALAVQPSMLVCDEAVAAL 551

Query: 190 DPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQSVESAETAKIVAE 249
           D   Q+QIL L   +      + L I HDL  I    DR+ VMY G+ VESA  A + A 
Sbjct: 552 DVSIQAQILNLFMDLRDQLGLAYLFISHDLGVIEHLCDRVVVMYLGRVVESAPVADLFAR 611

Query: 250 PKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGPRCPYAQRQC-VEV 308
           P HPYT ALL  +P             ++ G IP     P GC   PRCP A  +C  EV
Sbjct: 612 PAHPYTQALLAEIPSID---ARGTTFSAIRGEIPSPIAPPSGCHFHPRCPQAMPRCRTEV 668

Query: 309 PHSRWVK-NHKFSCH 322
           P  R +   H  +CH
Sbjct: 669 PRLRGIAIRHATACH 683