Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  202 bits (513), Expect = 1e-56
 Identities = 114/307 (37%), Positives = 175/307 (57%), Gaps = 9/307 (2%)

Query: 3   LLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENWR 62
           LL++  L +   TP G V AV+ ++ T+  GE  G+VGESGSGKS  A A++G+   N R
Sbjct: 17  LLEVNDLRVTFATPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALMGLLATNGR 76

Query: 63  VTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRTFE 122
           +       G  ++L L  RE   + A  ++MIFQ+P T L+P   VG QL+E +      
Sbjct: 77  IGGSATFNGR-EILNLPERELNTLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGM 135

Query: 123 GRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPKLLIA 182
            +  E F    ++++ +L  V + + +  M  YP+E + G  Q+VMIAMA+  +PKLLIA
Sbjct: 136 SKA-EAF----EESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 190

Query: 183 DEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQSVESAE 242
           DEPT  +D   Q+QI+ LL+ + +  NT+I++I HDL  +    D++ VMY G+++E  +
Sbjct: 191 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGK 250

Query: 243 TAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGPRCPYAQ 302
              +  +P HPY+  LL A+P          ++ ++PG+ P L  LP GC   PRCP+A 
Sbjct: 251 ARDVFYQPVHPYSIGLLNAVPRLDS---EGAEMLTIPGNPPNLLRLPKGCPFQPRCPHAM 307

Query: 303 RQCVEVP 309
             C   P
Sbjct: 308 EICNNAP 314