Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., D-ala-D-ala transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  216 bits (550), Expect = 6e-61
 Identities = 128/330 (38%), Positives = 191/330 (57%), Gaps = 19/330 (5%)

Query: 2   PLLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKE-N 60
           P+LDI+ L +      G V A++ +SL +N GEI GLVGESGSGKS+ A  I+ +    +
Sbjct: 4   PVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGESGSGKSVTAMLIMRLLPTGS 63

Query: 61  WRVTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESI---- 116
           + V   ++ L   D+L    ++ R+     VAMIFQEP T L+P+  +G Q+++ I    
Sbjct: 64  YCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPMTALNPTRRIGLQMMDVIRHHQ 123

Query: 117 PFRTFEGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAK 176
           P    E R          +AI LL ++ I D  ++MS YP+EL+ G  Q+VMIA+A + +
Sbjct: 124 PISRREAR---------AKAIDLLEEMQIPDAVEVMSRYPFELSGGMRQRVMIALAFSCE 174

Query: 177 PKLLIADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQ 236
           P+L+IADEPT  +D   Q Q+LRLL    + + T++L I HD+  ++Q  D + VMY G 
Sbjct: 175 PQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMAVVSQLCDSVYVMYAGS 234

Query: 237 SVESAETAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGP 296
            +ES  TA ++  P+HPYT  LL+  P+    +P +Q L ++PG++P L HLP GC    
Sbjct: 235 VIESGVTADVIHHPRHPYTIGLLQCAPEHG--VP-RQLLPAIPGTVPNLTHLPDGCAFRD 291

Query: 297 RCPYAQRQCVEVP--HSRWVKNHKFSCHFP 324
           RC  A  QC  VP   +    N + +C +P
Sbjct: 292 RCYAAGAQCENVPALTACGDNNQRCACWYP 321