Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD from Escherichia coli ECRC62

 Score =  201 bits (510), Expect = 3e-56
 Identities = 112/307 (36%), Positives = 175/307 (57%), Gaps = 9/307 (2%)

Query: 3   LLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENWR 62
           LL+++ L +   TP G V AV+ ++ ++  GE  G+VGESGSGKS  A A++G+   N R
Sbjct: 19  LLNVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR 78

Query: 63  VTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIPFRTFE 122
           +       G  ++L L   E  ++ A  ++MIFQ+P T L+P   VG QL+E +      
Sbjct: 79  IGGSATFNGR-EILNLPEHELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNM 137

Query: 123 GRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPKLLIA 182
            +  E F    ++++ +L  V + + +  M  YP+E + G  Q+VMIAMA+  +PKLLIA
Sbjct: 138 SKA-EAF----EESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIA 192

Query: 183 DEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQSVESAE 242
           DEPT  +D   Q+QI+ LL+ + +  NT+I++I HDL  +    D++ VMY G+++E   
Sbjct: 193 DEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 252

Query: 243 TAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGPRCPYAQ 302
              +  +P HPY+  LL A+P         + + ++PG+ P L  LP GC   PRCP+A 
Sbjct: 253 ARDVFYQPVHPYSIGLLNAVPRLD---AEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAM 309

Query: 303 RQCVEVP 309
             C   P
Sbjct: 310 EICSSAP 316