Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Oligopeptide transport ATP-binding protein OppD from Azospirillum sp. SherDot2

 Score =  199 bits (505), Expect = 1e-55
 Identities = 118/309 (38%), Positives = 171/309 (55%), Gaps = 11/309 (3%)

Query: 4   LDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENWRV 63
           LDIR+L        G+ KAVD +S  +   E   +VGESGSGKS+ + + + +      +
Sbjct: 7   LDIRNLQTHFTADPGVSKAVDGVSFAVRRNETLAVVGESGSGKSVTSLSAMRLIPSPPGI 66

Query: 64  TAD-----RMRLGNI-DLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESIP 117
            A      R R G + DL +L+ R  R V   ++ MIFQEP T L+P   VG Q+ E++ 
Sbjct: 67  IAGGEILFRGRDGQVRDLARLSERAMRSVRGNEIGMIFQEPMTSLNPVYTVGDQIGEALR 126

Query: 118 FRTFEGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKP 177
           +     R   R      +A+A+L KVGI   +  +  YP++++ G  Q+VMIAMA+A +P
Sbjct: 127 YHQGLDRRAAR-----AEALAMLKKVGIPAAERRLDEYPHQMSGGMRQRVMIAMALACRP 181

Query: 178 KLLIADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQS 237
            LLIADEPT  +D   Q+QIL L+ R+ +   TSIL I H+L  + + A R+ VMY G+ 
Sbjct: 182 TLLIADEPTTALDVTIQAQILDLMRRLQEETGTSILFITHNLGVVAEVAHRVVVMYSGRI 241

Query: 238 VESAETAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGPR 297
           VE  +   ++  PKHPYT  LL  MP          +L ++PGS+P   + P GC   PR
Sbjct: 242 VEEGDVRSLLKSPKHPYTRGLLACMPHLGQRRGDGGRLYAIPGSVPSPVNRPAGCTFAPR 301

Query: 298 CPYAQRQCV 306
           C  A+  C+
Sbjct: 302 CALAEPACL 310