Pairwise Alignments

Query, 331 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  208 bits (530), Expect = 1e-58
 Identities = 115/324 (35%), Positives = 188/324 (58%), Gaps = 17/324 (5%)

Query: 3   LLDIRHLTIEIDTPQGLVKAVDRMSLTMNEGEIRGLVGESGSGKSLVAKAIVGICKENWR 62
           ++D+R+L +E    +G V A+  +SL++  GEI G+VGESG+GKS+   AI G+ ++  R
Sbjct: 5   VIDVRNLKVEFPGRRGTVTALSDISLSIRPGEILGVVGESGAGKSMTGLAIQGLLEKPGR 64

Query: 63  VTADRMRLGNIDLLQLTPRERRRVIARDVAMIFQEPSTCLDPSEEVGRQLIESI----PF 118
           +    + LG+  + QL  R    +  R++  IFQ+P T L+P   VG QL+E+I    P 
Sbjct: 65  IADGEIWLGSRRIDQLDDRAMESIRGREIGAIFQDPLTSLNPLFTVGAQLVETIRQHLPL 124

Query: 119 RTFEGRWWERFTWRKKQAIALLHKVGIKDHKDIMSSYPYELTDGECQKVMIAMAIAAKPK 178
              + R          +AI LL  VGI    D +  YP++ + G  Q+V+IA+A++A PK
Sbjct: 125 SKADAR---------ARAIQLLRDVGIPSPADRIDHYPHQFSGGMRQRVVIALALSASPK 175

Query: 179 LLIADEPTNDVDPITQSQILRLLSRMNQVNNTSILLIGHDLTTITQWADRITVMYCGQSV 238
           L+IADEPT  +D   Q+QI+ LL R+ +   T+++L+ HD+  I + ADR+ V+Y G+ +
Sbjct: 176 LIIADEPTTALDVSIQAQIISLLRRLCKEKQTAVMLVTHDMGVIAEAADRVAVLYAGRLI 235

Query: 239 ESAETAKIVAEPKHPYTAALLKAMPDFSDWIPHKQKLQSLPGSIPPLQHLPIGCRLGPRC 298
           E     +++ EP+HPYT  L+ ++P     +   ++L  + G++P L  +P GC   PRC
Sbjct: 236 EVGPVEQVLHEPRHPYTQGLMASIPSLGARV---ERLNQIDGAMPRLDAIPPGCAFNPRC 292

Query: 299 PYAQRQCV-EVPHSRWVKNHKFSC 321
            +A  +C+ + P    V N   +C
Sbjct: 293 SFAGPRCLRQRPELETVGNGASAC 316