Pairwise Alignments

Query, 295 a.a., peptide ABC transporter permease SapC from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., putative D,D-dipeptide transport system permease protein DdpC from Xanthobacter sp. DMC5

 Score =  169 bits (428), Expect = 7e-47
 Identities = 98/270 (36%), Positives = 144/270 (53%), Gaps = 8/270 (2%)

Query: 24  RANNLAMFGLWSLLFIALVTILSPWIAPYDP-QMHSSVLLLPPSWEPEGTVDYFLGTDDL 82
           R N +        + +  + +L+PWI PYDP   +    L PPS        ++ GTD L
Sbjct: 13  RGNPVTACAAAGAVVLVAIAVLAPWITPYDPIASNVPAALQPPS------AAHWAGTDQL 66

Query: 83  GRDILSRLIDGSLFSIGAAVLITLIATLVGGTIGALAGMTKGLLSSTLNHILDTVMSIPS 142
           GRDI SRLI  +   +G AV   L++ + G TIGAL G   G +  ++  ++D +M+ P 
Sbjct: 67  GRDIFSRLIAATRLDLGIAVSAVLLSFVAGATIGALCGYAGGRVDRSVGRLVDVLMAFPL 126

Query: 143 LLLAIIFVAFLGAGEFNILLAIGLALIPRFIRSVYVAVHNEVEKDYVMAARLDGANEFYL 202
            +LA+  VA LG    NI++A  L  +P +IR     V+      +V AAR  G +   +
Sbjct: 127 FVLAMALVAALGNRVENIVIATALINLPFYIRFARAEVNVRRHAGWVEAARAGGESHATI 186

Query: 203 LWHSIFPNILPIIVAEITMALSIAILDITALGFLGLGAQSPSTEWGAMLGDSVELIYIAP 262
           +   + PNILP +  +I++ L  AIL+   L FLGLG Q+P+ EWG M+ +    I    
Sbjct: 187 VLAYLLPNILPAMAVQISLNLGWAILNAAGLSFLGLGVQAPTPEWGIMVAEGARFIGNGQ 246

Query: 263 -WTVTLPGLAIMFTVVVINLVGDGARQALN 291
            W V  PGLA+M  V+  NL+GDG R  L+
Sbjct: 247 WWLVAFPGLALMLAVLCFNLLGDGLRDILD 276