Pairwise Alignments

Query, 295 a.a., peptide ABC transporter permease SapC from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., D-ala-D-ala transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  171 bits (432), Expect = 2e-47
 Identities = 97/258 (37%), Positives = 149/258 (57%), Gaps = 9/258 (3%)

Query: 36  LLFIALVTILSPWIAPYDPQ-MHSSVLLLPPSWEPEGTVDYFLGTDDLGRDILSRLIDGS 94
           ++ + L+ I SPW+A +DP  +  +  LLPPS        ++ GTD++GRD+ SR++ GS
Sbjct: 40  IVLMLLMMIFSPWLATHDPNAIDLTARLLPPS------AAHWFGTDEVGRDLFSRVLVGS 93

Query: 95  LFSIGAAVLITLIATLVGGTIGALAGMTKGLLSSTLNHILDTVMSIPSLLLAIIFVAFLG 154
             SI A +++  IA ++G  +G L+G+  G   + +  I+D ++SIPSL+L +   A LG
Sbjct: 94  QQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALG 153

Query: 155 AGEFNILLAIGLALIPRFIRSVYVAVHNEVEKDYVMAARLDGANEFYLL-WHSIFPNILP 213
              FN +LAI +  IP ++R          +  YV AA+  GA+ ++L+ WH I  N LP
Sbjct: 154 PSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWH-ILRNSLP 212

Query: 214 IIVAEITMALSIAILDITALGFLGLGAQSPSTEWGAMLGDSVELIYIAPWTVTLPGLAIM 273
            ++ + ++ +  AIL    LGF+GLGAQ PS EWGAM+ +    +    W    PG AI+
Sbjct: 213 PLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAIL 272

Query: 274 FTVVVINLVGDGARQALN 291
            T V  NL GDG R  L+
Sbjct: 273 LTAVGFNLFGDGIRDLLD 290