Pairwise Alignments

Query, 295 a.a., peptide ABC transporter permease SapC from Vibrio cholerae E7946 ATCC 55056

Subject, 296 a.a., predicted antimicrobial peptide transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  322 bits (825), Expect = 6e-93
 Identities = 162/293 (55%), Positives = 210/293 (71%), Gaps = 1/293 (0%)

Query: 4   DSIYQEEHIPTQFERFWRSFRANNLAMFGLWSLLFIALVTILSPWIAPYD-PQMHSSVLL 62
           DS+Y E+  P      WR F ++  AM GL+    +A++ I   W APY   Q      L
Sbjct: 4   DSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCIFGGWFAPYGIDQQFLGYQL 63

Query: 63  LPPSWEPEGTVDYFLGTDDLGRDILSRLIDGSLFSIGAAVLITLIATLVGGTIGALAGMT 122
           LPPSW   G V +FLGTDDLGRD+LSRL+ G+  ++G A ++TL AT+ G  +G  AG T
Sbjct: 64  LPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGAFVVTLAATICGLVLGTFAGAT 123

Query: 123 KGLLSSTLNHILDTVMSIPSLLLAIIFVAFLGAGEFNILLAIGLALIPRFIRSVYVAVHN 182
            GL S+ LNHILDT+++IPSLLLAII VAF G    + + A+ LAL+PR +RS+Y  VH+
Sbjct: 124 HGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSHAMFAVWLALLPRMVRSIYSMVHD 183

Query: 183 EVEKDYVMAARLDGANEFYLLWHSIFPNILPIIVAEITMALSIAILDITALGFLGLGAQS 242
           E+EK+YV+AARLDGA+   +LW ++ PNI   +V EIT ALS+AILDI ALGFL LGAQ 
Sbjct: 184 ELEKEYVIAARLDGASTLNILWFAVMPNITAGLVTEITRALSMAILDIAALGFLDLGAQL 243

Query: 243 PSTEWGAMLGDSVELIYIAPWTVTLPGLAIMFTVVVINLVGDGARQALNAGVE 295
           PS EWGAMLGD++ELIY+APWTV LPG AIM +V+++NL+GDG R+A+ AGVE
Sbjct: 244 PSPEWGAMLGDALELIYVAPWTVMLPGAAIMISVLLVNLLGDGVRRAIIAGVE 296