Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., Dipeptide transport system permease protein DppB from Xanthobacter sp. DMC5

 Score =  152 bits (383), Expect = 1e-41
 Identities = 80/275 (29%), Positives = 145/275 (52%), Gaps = 6/275 (2%)

Query: 44  WSSYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQ 102
           ++ Y+  L   + G +   G P+  E+    PA+ EL     +L+LL+ +P G +A +RQ
Sbjct: 65  FADYVSALAHGDLGSSLSTGQPVATEIASRLPASAELTLAGLVLALLIAVPFGIMAAVRQ 124

Query: 103 GKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVA-GRYDLLYQI-DHVTGFAL 160
           G W+D     I+ +G S P+F+  L+++  F       P   GR D+ +   + VTGF L
Sbjct: 125 GSWIDHACRIITTAGVSLPVFFTGLLLVYVFYFKLGWAPAPLGRLDVFFSAPETVTGFYL 184

Query: 161 IDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIK 220
           ID+ +++     +  ++ +  L +P + LA+     +    RAS+  V++  ++R AK  
Sbjct: 185 IDSLIARD---FETFRAALAQLAVPAITLAIFALAPIARMTRASMLAVLSSEFVRTAKAA 241

Query: 221 GLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDF 280
           GL++Y ++  +  RNA+ P++   G+  S +L   ++ E +F WPGIG + ++AL   D+
Sbjct: 242 GLTDYTVIITYAFRNAMLPVVTTLGMVFSFLLGANVLVEKVFAWPGIGSYAVEALITSDY 301

Query: 281 MSIQAGVIVVGTLVLTANILSDLIGAAANPLVRKE 315
             +Q  V+ +  L +  N+L DL     +P  R E
Sbjct: 302 APVQGFVLAMAILYVILNLLIDLAYGIIDPRARSE 336