Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  210 bits (534), Expect = 4e-59
 Identities = 119/339 (35%), Positives = 187/339 (55%), Gaps = 28/339 (8%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPW-TLIGFWQGWSSYLVQLMEFNFGLN 59
           MF +  R+  L I T   +T++ ++L R  P  P   ++G  +       Q ME   GLN
Sbjct: 1   MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAME-RLGLN 59

Query: 60  K-----------------------NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGT 96
           K                           +  E   +FPAT+EL   A + + ++G+  G 
Sbjct: 60  KPLYAQYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGV 119

Query: 97  LAGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVT 156
           +A +++G   D  +  IS++GYS PIFW  L++IM FS+     PV+GR DLLY I+  T
Sbjct: 120 IAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRT 179

Query: 157 GFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRA 216
           GF LID  L+  P    A    + HL LP +VL   P   +    R+S+ EV+ ++YIR 
Sbjct: 180 GFMLIDTLLADEP---DAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRT 236

Query: 217 AKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALA 276
           AK KGLS  ++V  H LRNA+ P++   G+Q+ ++L  A++TE+IF+WPGIG+WL++A+ 
Sbjct: 237 AKAKGLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIG 296

Query: 277 NRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVRKE 315
            RD+  +Q G++++  LV+  N + D++   ANP +R +
Sbjct: 297 ARDYPVVQNGILLIACLVILVNFVVDILYGFANPRIRHQ 335