Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  136 bits (342), Expect = 8e-37
 Identities = 81/269 (30%), Positives = 139/269 (51%), Gaps = 18/269 (6%)

Query: 46  SYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGK 104
           +YL  L  F+ G++ +  +P++  +      T+ L   A   +L +GI  GT+   R G+
Sbjct: 74  AYLNNLAHFSLGISPRYNMPVVSLIGARLGNTLLLMVTALAFALAIGIAAGTVMATRVGR 133

Query: 105 WLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAF 164
           W D  +S +++  YS P FWL LM I+ FS+H    P  G   +       TG+  +   
Sbjct: 134 WQDRTLSVLALLLYSTPGFWLGLMAIVLFSVHLGWLPTGGSESIGAGY---TGWTHV--- 187

Query: 165 LSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSN 224
                        V  HL LP L +A           RA++ EV  Q+++R A+ KGL  
Sbjct: 188 -----------VDVARHLVLPALAMAGFYIAIFSRLTRAAMLEVSRQDFVRTAEAKGLHP 236

Query: 225 YQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQ 284
           + +  +H+LRNA+ P+    G+   ++L  A++ E++F+WPG+GR   D++A RD+  + 
Sbjct: 237 WTVNLRHILRNALIPVTTVAGMHFGTLLGGAVVVETVFSWPGLGRLAFDSVAGRDYTVLL 296

Query: 285 AGVIVVGTLVLTANILSDLIGAAANPLVR 313
             +++   LV+ AN+L DL+ A  +P ++
Sbjct: 297 GVLLMSSLLVIVANMLVDLLHAWLDPRIQ 325