Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  204 bits (520), Expect = 2e-57
 Identities = 109/337 (32%), Positives = 186/337 (55%), Gaps = 26/337 (7%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLIGFWQGWSSYLVQLMEFNFGLNK 60
           MF + + + +L + T + +T++ + L R  P  P   +   +G        +   +G +K
Sbjct: 1   MFRFILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMAGERGIDPARHAELRTAYGFDK 60

Query: 61  NGV-----------------------PILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
             +                        ++ E L +FPAT+EL   A + +LL+G+P G L
Sbjct: 61  PVIVQYGIYIGRVLHGDLGKSIITQDTVMSEFLALFPATVELAVCAILFALLLGLPAGIL 120

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTG 157
           A +R+    D  +   S++GYS PIFW  L++I+ FS+     PV+GR  + Y I+  TG
Sbjct: 121 AAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYYIEPETG 180

Query: 158 FALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAA 217
           F LID+  +     + A  S + HL LP +VL   P   +    R+++ EV+ ++YIR A
Sbjct: 181 FLLIDSLRAGD---TGAFWSALHHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDYIRTA 237

Query: 218 KIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALAN 277
           + KGLS  ++V  H LRNA+ P++   G+Q+  + T AI+TE+IF+WPG+G+WL++A+  
Sbjct: 238 RAKGLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGR 297

Query: 278 RDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVRK 314
           RD+  +Q G++++G +V+  N+L D+     NP +R+
Sbjct: 298 RDYPVLQGGMLLLGGIVMLVNLLVDVAYGVINPRIRR 334