Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  145 bits (367), Expect = 1e-39
 Identities = 88/324 (27%), Positives = 160/324 (49%), Gaps = 41/324 (12%)

Query: 13  IITLLILTMVGYSLARFDPHSPWTLIGFWQGWSSYLVQLMEFNFGLNKN----------- 61
           ++ +++L  V    A  DP    T+ G   G S  L+  +   +GL+K+           
Sbjct: 21  VLAVVVLNFVLVHAAPGDPVE--TIAGASGGMSPELMAQLRTQYGLDKSLPVQLAVYLGK 78

Query: 62  ------------GVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTI 109
                        +P+   +    PAT+ L   + +L+   G  +G L+  +   WL   
Sbjct: 79  VAQGDLGYSYFFNLPVTQMIGERLPATLLLVLSSVLLAFFAGTALGVLSSRKPNGWLSQF 138

Query: 110 ISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFLSQSP 169
           I+ +S+ G++AP+FWL +M+++  +  FP+ PVAG    +  ID        D       
Sbjct: 139 ITVLSLVGFAAPVFWLGIMLVILLASVFPILPVAG----MRSIDSTGAGGFAD------- 187

Query: 170 YRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVT 229
                +  V +HL LP L L+L    Q     R+S+ +V+  ++IR A+ KGL++  ++ 
Sbjct: 188 -----MLDVAQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARAKGLADRVVLY 242

Query: 230 QHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIV 289
           +H LRNA+ P++   G+Q  ++L  AI+ E++FNWPG+GR   +++  RD+ +I   ++ 
Sbjct: 243 KHALRNALLPVVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRDYPTILGVLLF 302

Query: 290 VGTLVLTANILSDLIGAAANPLVR 313
              +V+  N L+DL     +P ++
Sbjct: 303 SSIVVVVMNQLTDLCYRFIDPRIK 326