Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  158 bits (400), Expect = 2e-43
 Identities = 77/254 (30%), Positives = 139/254 (54%), Gaps = 5/254 (1%)

Query: 62  GVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFISMSGYSAP 121
           G  +L +L   FPAT+EL T+  +L ++ G+P+G LA  +  +W+D ++  + + GYS P
Sbjct: 89  GRAVLEDLRQYFPATLELATLGILLGVVFGVPLGMLAAHQHNRWIDQLLRLVGLLGYSVP 148

Query: 122 IFWLALMMIMAFSLHFPVFPVAGRYDLLYQ--IDHVTGFALIDAFLSQSPYRSQALQSVI 179
           +FWL L+ ++ F          GR D +YQ  +D  +   L+D   + +    +A ++ +
Sbjct: 149 VFWLGLVGLLIFYARLGWVGGPGRLDDIYQYTVDSWSNLVLVDTLRAGN---GEAFRNGL 205

Query: 180 EHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVLRNAIPP 239
            HL LP  +L       +    RA   E + + Y+  A++KG S  Q++ +HVL N   P
Sbjct: 206 SHLVLPAALLGYFSLAYISRMTRAFFLEELGKEYVLTARVKGASELQVLVRHVLPNVAAP 265

Query: 240 MIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTLVLTANI 299
           ++    +  + +L  A++TE++F+WPGIG ++ +AL + D  ++  G ++VG   +  N 
Sbjct: 266 LVTVIALSYAVLLEGAVLTETVFSWPGIGLYVTNALFSADVAAVLGGTLLVGLCFVVLNT 325

Query: 300 LSDLIGAAANPLVR 313
            SD++G   +P  R
Sbjct: 326 ASDVLGYLMDPRAR 339