Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., Binding-protein-dependent transport systems inner membrane component from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  208 bits (530), Expect = 1e-58
 Identities = 113/338 (33%), Positives = 189/338 (55%), Gaps = 26/338 (7%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLI---------------------- 38
           MF +  R+  L I T   +T++ ++L R  P  P  ++                      
Sbjct: 1   MFSFIARRVGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 39  GFWQGWSSYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
             +  +  Y+ +L + + G + +    +  E   +FPAT+EL   A I + ++G+  G +
Sbjct: 61  PLYAQYIDYIGKLAQGDLGESLRTRTSVWSEFTSLFPATLELSLAALIFAGILGLLAGVI 120

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTG 157
           A +++G   D  +  IS++GYS PIFW  L++IM FS+     PV+GR DLLY I  VTG
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVTLGWTPVSGRIDLLYDIPPVTG 180

Query: 158 FALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAA 217
           F LID  LS       +    + H+ LP +VL   P   +    R+S+ EV+ ++Y+R A
Sbjct: 181 FMLIDTLLSDE---QGSFLDALHHMILPAIVLGTIPLAVIARMTRSSMLEVLREDYVRTA 237

Query: 218 KIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALAN 277
           + KGLS  ++V  H LRNA+ P++  FG+Q+ ++L  A++TE+IF+WPGIG+WL++A+  
Sbjct: 238 RAKGLSPARVVFVHGLRNALIPVLTVFGLQIGTLLAGAVLTETIFSWPGIGKWLIEAIGA 297

Query: 278 RDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVRKE 315
           RD+  +Q G++++  LV+  N + D++   ANP +R +
Sbjct: 298 RDYPVVQNGILLIACLVILVNFVVDILYGFANPRIRHQ 335