Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  211 bits (537), Expect = 2e-59
 Identities = 121/340 (35%), Positives = 191/340 (56%), Gaps = 30/340 (8%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPW-TLIGFWQGWSSYLVQLMEFNFGLN 59
           M  +  R+  L I T   +T++ ++L R  P  P   ++G  +       Q ME   GLN
Sbjct: 1   MLSFIARRLGLLIPTFFGITLLTFALIRLIPGDPVEVMMGERRVDPEMHAQAME-RLGLN 59

Query: 60  KNGVPILH------------------------ELLVVFPATIELCTIAFILSLLVGIPIG 95
           K  +P+ +                        E L +FPAT+EL   A + + +VG+  G
Sbjct: 60  KP-LPVQYLDYVGKLAQGDLGESLRTRESVWREFLTLFPATLELAFAALLFAGVVGLLAG 118

Query: 96  TLAGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHV 155
            +A +++G   D  +  IS++GYS PIFW  L++IM FS+     PV+GR DLLY I+  
Sbjct: 119 VIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPK 178

Query: 156 TGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIR 215
           TGF LID  LS       A +  + HL LP +VL   P   +    R+S+ EV+ ++YIR
Sbjct: 179 TGFMLIDTLLSDE---EGAFKDAVMHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIR 235

Query: 216 AAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDAL 275
            A+ KGLS  ++V  H LRNA+ P++  FG+Q+ ++L  A++TE+IF+WPGIG+WL++A+
Sbjct: 236 TARAKGLSPARVVFVHGLRNALIPVLTVFGLQVGTLLAGAVLTETIFSWPGIGKWLIEAI 295

Query: 276 ANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVRKE 315
             RD+  +Q G++++  LV+  N + D++   ANP +R +
Sbjct: 296 GARDYPVVQNGILLIACLVILVNFVVDILYGLANPRIRHQ 335