Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  209 bits (533), Expect = 6e-59
 Identities = 111/339 (32%), Positives = 190/339 (56%), Gaps = 29/339 (8%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLIG--------------------- 39
           M  + +R+  L I T + +T++ ++     P  P  ++                      
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK 60

Query: 40  -FWQGWSSYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
             WQ +  Y+  +M  + G++ K+ +P+  E +  F AT+EL   A I ++ VGIP+G L
Sbjct: 61  PMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVL 120

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDH--- 154
           A +++G   D     ++++GYS PIFW  +M+IM  S+H+ + PV+GR   +  +D    
Sbjct: 121 AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDTNP 180

Query: 155 VTGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYI 214
           +TGF LID  +             + H+ LP +VL   P   ++   R+S+ EV+ ++YI
Sbjct: 181 LTGFMLIDTAIWGEEGN---FIDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYI 237

Query: 215 RAAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDA 274
           R A+ KGL+  +++  H LRNA+ P++   G+Q+ ++L  AI+TE+IF+WPG+GRWL+DA
Sbjct: 238 RTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDA 297

Query: 275 LANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
           L  RD+  +Q GV++V T+++  N+L DL+    NP +R
Sbjct: 298 LQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336