Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., Peptide transport system permease protein SapB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  344 bits (883), Expect = 1e-99
 Identities = 158/321 (49%), Positives = 233/321 (72%), Gaps = 1/321 (0%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLIGFWQGWSSYLVQLMEFNFGLNK 60
           M ++T+R+  L ++TL  LT +G+SL+ F PH+P      W  W  +   L+ ++FG++ 
Sbjct: 1   MIIFTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAWVFWFNGLLHWDFGVSS 60

Query: 61  -NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFISMSGYS 119
            NG  I  +L  VFPAT+ELC +AF  +L+VGIP+G LAG+ + KW D  IS +++ G+S
Sbjct: 61  INGQLISEQLKEVFPATMELCILAFGFALMVGIPVGMLAGVTRSKWPDRFISALALLGFS 120

Query: 120 APIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFLSQSPYRSQALQSVI 179
            P+FWLAL++ + FSL     PV+GR+DLLY++  VTGFA+IDA++S SP+R + + S I
Sbjct: 121 IPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFAIIDAWISDSPWRDEMVMSAI 180

Query: 180 EHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVLRNAIPP 239
            H+ LP L L++APTT+VI  MR S  EV +QNY++AA  +GLS + I+ +HVL NA+PP
Sbjct: 181 RHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPP 240

Query: 240 MIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTLVLTANI 299
           +IP+ G+Q S+MLTLA+ITE +F+WPG+GRWL+ A+  +D+ +I AGV+V+G+LV+  N+
Sbjct: 241 VIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAIRQQDYAAISAGVMVIGSLVIVVNV 300

Query: 300 LSDLIGAAANPLVRKEWYVKR 320
           +SD++GA ANPL  KEWY  R
Sbjct: 301 ISDILGAMANPLKHKEWYALR 321