Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter, membrane subunit (DppB) (from data) from Escherichia coli BW25113

 Score =  209 bits (533), Expect = 6e-59
 Identities = 111/339 (32%), Positives = 189/339 (55%), Gaps = 29/339 (8%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLIG--------------------- 39
           M  + +R+  L I T + +T++ ++     P  P  ++                      
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK 60

Query: 40  -FWQGWSSYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
             WQ +  Y+  +M  + G++ K+ +P+  E +  F AT+EL   A I +  VGIP+G L
Sbjct: 61  PMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVL 120

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDH--- 154
           A +++G   D     ++++GYS PIFW  +M+IM  S+H+ + PV+GR   +  +D    
Sbjct: 121 AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNP 180

Query: 155 VTGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYI 214
           +TGF LID  +             + H+ LP +VL   P   ++   R+S+ EV+ ++YI
Sbjct: 181 LTGFMLIDTAIWGEDGN---FIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYI 237

Query: 215 RAAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDA 274
           R A+ KGL+  +++  H LRNA+ P++   G+Q+ ++L  AI+TE+IF+WPG+GRWL+DA
Sbjct: 238 RTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDA 297

Query: 275 LANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
           L  RD+  +Q GV++V T+++  N+L DL+    NP +R
Sbjct: 298 LQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIR 336