Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., D-ala-D-ala transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  176 bits (445), Expect = 9e-49
 Identities = 94/268 (35%), Positives = 156/268 (58%), Gaps = 5/268 (1%)

Query: 47  YLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
           Y+  L   + G + + G P+L EL + FPAT+EL   A +L+LL+GIP+G L+ + + +W
Sbjct: 70  YVSDLFHGDLGTSIRTGRPVLEELRIFFPATLELAFGALLLALLIGIPLGILSAVWRNRW 129

Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYD-LLYQIDHVTGFALIDAF 164
           LD ++  ++++G S P FWL L +I+ F  H  + P  GR D  L    HVTGF L+DA 
Sbjct: 130 LDHLVRIMAITGISTPAFWLGLGVIVLFYGHLQILPGGGRLDDWLDPPTHVTGFYLLDAL 189

Query: 165 LSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSN 224
           L  +    +   + ++HL LP L LA      V  Q+R+++ E ++++YIR A+  GL  
Sbjct: 190 LEGN---GEVFFNALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLPG 246

Query: 225 YQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQ 284
           + IV  + L NA+ P I   G+ L  +L  A++TE++F WPG+G W++ ++   DF ++ 
Sbjct: 247 WYIVLCYALPNALIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAVM 306

Query: 285 AGVIVVGTLVLTANILSDLIGAAANPLV 312
              +VV    +  N++ DL+    +P +
Sbjct: 307 GFAVVVSFAYVLVNLVVDLLYLWIDPRI 334