Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Kangiella aquimarina DSM 16071

 Score =  225 bits (574), Expect = 1e-63
 Identities = 118/317 (37%), Positives = 192/317 (60%), Gaps = 3/317 (0%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSP--WTLIGFWQGWSSYLVQLMEFNFGL 58
           MF   +R     +I+L  LT++ + L++    +   +    F   +  YL  L+  ++G 
Sbjct: 1   MFKLLIRHGTTLLISLFGLTLLTFVLSQRGDSALHIYQSQHFMGQYLEYLQYLLAGDWGY 60

Query: 59  NK-NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFISMSG 117
           +  +  P+L++ L  FPATIEL  +A + +++ G+ +G +A  R+GKWLD  +  ++++G
Sbjct: 61  SSIHNRPVLYDFLQHFPATIELVMLALLFAIIFGLTLGIMAANRRGKWLDNTLMGVTLAG 120

Query: 118 YSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFLSQSPYRSQALQS 177
           YS PI+W  +++++ FSL     PVAGR D +Y +  VT F LID+ LSQ  Y   A  +
Sbjct: 121 YSMPIYWWGMLLVLLFSLTLGWTPVAGRIDYIYDVPPVTRFMLIDSLLSQDQYGFDAFFN 180

Query: 178 VIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVLRNAI 237
            + HL LP + L+  P   +    R+S+  V+   YIR A+ KGLS  +I+  H LRNA+
Sbjct: 181 ALLHLILPAITLSTIPMAIIARMTRSSLLGVLKAEYIRTARSKGLSQQRIIWVHALRNAL 240

Query: 238 PPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTLVLTA 297
            P++   GVQ+S +++  IITE IF WPG+G+WLL+A++ RDF SIQAG++ +  LV+  
Sbjct: 241 IPILTISGVQVSIIMSGVIITEYIFAWPGVGKWLLEAVSRRDFASIQAGILALSLLVIAF 300

Query: 298 NILSDLIGAAANPLVRK 314
           N+  DL+ +  NP +R+
Sbjct: 301 NLALDLLASYMNPRLRR 317