Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  136 bits (343), Expect = 6e-37
 Identities = 76/268 (28%), Positives = 140/268 (52%), Gaps = 24/268 (8%)

Query: 47  YLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
           +L + ++ + G++ +   P+   +    P T+EL  +A I++L+ GI +G LA + +  W
Sbjct: 68  WLTRALQGDLGVSLRTHEPVTQLIASKLPVTLELSLLAMIIALVFGISMGILAAVNKNSW 127

Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFL 165
           +D   +F+++SG S P FWL +++I+ FS++    P +G                     
Sbjct: 128 VDHGANFVAISGISIPHFWLGILLILVFSVNLQWLPASGYV------------------- 168

Query: 166 SQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNY 225
              P+    +Q+ +  L LP  VL       ++   RAS+  V+  +YIR A+ KGL   
Sbjct: 169 ---PFSEDPIQN-LRTLLLPASVLGTGLAATLMRHTRASMIAVLKADYIRTARAKGLLPK 224

Query: 226 QIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQA 285
            ++ +H  RNA+ P+I    +    +L  A++TE +F  PG G+ ++D++ NRD+  +Q 
Sbjct: 225 AVILKHAFRNALVPVITLTTLLFGELLGGAVLTEQVFTIPGFGKMIVDSVFNRDYAVVQG 284

Query: 286 GVIVVGTLVLTANILSDLIGAAANPLVR 313
            V++V    L  N+L+D++    NP +R
Sbjct: 285 VVLIVAIGFLMLNLLADVLYVLINPKMR 312