Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  166 bits (419), Expect = 1e-45
 Identities = 97/279 (34%), Positives = 151/279 (54%), Gaps = 10/279 (3%)

Query: 38  IGFWQGWSSYLVQLMEFNFGL-NKNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGT 96
           + FW     YL  L   + G  +  G P+L +LL  FPAT+EL T+A I+  ++G+  G 
Sbjct: 66  VQFWH----YLQNLAHGDLGTASATGQPVLQDLLHAFPATLELATLALIIGAVLGVIAGV 121

Query: 97  LAGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQ--IDH 154
           L     G  LD  I  +++ G S PIFWL L+M+  F     +    GR D ++Q  ++ 
Sbjct: 122 LCARYAGSPLDLAIRTLTLLGNSVPIFWLGLLMLALFYAKLQLSAGPGRLDDIWQFTVEP 181

Query: 155 VTGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYI 214
            TGFAL+D +LS      +A ++ + HL LP L+LA      +    R++    MN+ YI
Sbjct: 182 RTGFALVDTWLSGD---REAFRNALNHLVLPVLLLAYYSLASITRLTRSACLSEMNKEYI 238

Query: 215 RAAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDA 274
             A+ KG     I+ +HVL N    ++    +  +SML  A++TE++F+WPGIGR+L  A
Sbjct: 239 LLARAKGAGEIAILLRHVLPNIRGTLLTVIALAYTSMLEGAVLTETVFSWPGIGRYLTTA 298

Query: 275 LANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
           L   D  ++  G +++G   +  N L+DL+  A +P VR
Sbjct: 299 LFAGDTTAVMGGTLLIGVCFVLINNLTDLLVRATDPRVR 337