Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., nickel ABC transporter permease subunit NikB from Escherichia coli ECRC98

 Score =  142 bits (358), Expect = 1e-38
 Identities = 90/339 (26%), Positives = 162/339 (47%), Gaps = 56/339 (16%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPW--------------------TLIGF 40
           M  Y +R+F L I  +L  +++ + + R     P                     T++G 
Sbjct: 1   MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGL 60

Query: 41  WQG----WSSYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIG 95
            Q     + ++L + +  +FG++     P+L ++L   PAT+EL   A +L LL  +P+G
Sbjct: 61  DQPLYVQYGTWLWKALHLDFGISFATQRPVLDDMLNFLPATLELAGAALVLILLTSVPLG 120

Query: 96  TLAGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHV 155
             A   + +  D  + FI+  G S P FWLA +++MAFS++    P  G           
Sbjct: 121 IWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMG----------- 169

Query: 156 TGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIR 215
                                   +H+ LP + +A          +RAS+ +V  Q ++ 
Sbjct: 170 --------------------YGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVT 209

Query: 216 AAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDAL 275
            A+++GL++ Q   +H+LRNA  PMI   G+ +  ++   +I E+IF WPG+GR+ + A+
Sbjct: 210 WARLRGLNDKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFTWPGVGRYAVSAI 269

Query: 276 ANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVRK 314
            NRD+  IQ   +++  + +  N++ DL+ AA +P +R+
Sbjct: 270 FNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRR 308