Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., putrescine ABC transporter permease SapB from Escherichia coli ECOR27

 Score =  346 bits (887), Expect = e-100
 Identities = 159/321 (49%), Positives = 235/321 (73%), Gaps = 1/321 (0%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLIGFWQGWSSYLVQLMEFNFGLNK 60
           M ++T+R+  L I+TL +LT VG+SL+ F PH+P      W  W  +   L+ ++FG++ 
Sbjct: 1   MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAWVFWFNGLIHWDFGVSS 60

Query: 61  -NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFISMSGYS 119
            NG PI  +L  VFPAT+ELC +AF  +L+VGIP+G +AG+ + KW D +I+ I++ G+S
Sbjct: 61  INGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGITRHKWQDNLINAIALLGFS 120

Query: 120 APIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFLSQSPYRSQALQSVI 179
            P+FWLAL++ +  SL     PV+GR+DLLY++  +TGFALIDA+LS SP+R + + S I
Sbjct: 121 IPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFALIDAWLSDSPWRDEMIMSAI 180

Query: 180 EHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVLRNAIPP 239
            H+ LP + L++APTT+VI  MR S  EV +QNY++AA  +GLS + I+ +HVL NA+PP
Sbjct: 181 RHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPP 240

Query: 240 MIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTLVLTANI 299
           +IP+ G+Q S+MLTLA+ITE +F+WPG+GRWL++A+  +D+ +I AGV+V G+LV+  N+
Sbjct: 241 VIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVCGSLVIIVNV 300

Query: 300 LSDLIGAAANPLVRKEWYVKR 320
           +SD++GA ANPL  KEWY  R
Sbjct: 301 ISDILGAMANPLKHKEWYALR 321