Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., ABC transporter permease from Dickeya dianthicola ME23

 Score =  172 bits (437), Expect = 8e-48
 Identities = 101/330 (30%), Positives = 174/330 (52%), Gaps = 21/330 (6%)

Query: 1   MFVYTVRKFNLFIITLLI---------LTMVGYSLARFDPHSPWTLIG-----FWQGWSS 46
           +F   V  F L I+T +I         L +VG    +      +  +G     + Q W  
Sbjct: 26  LFQVAVTLFGLLILTFVIGRVMPIDPVLAIVGQDADQSTYQQVYQQLGLDKPLYVQFWI- 84

Query: 47  YLVQLMEFNFG-LNKNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKW 105
           Y   L+  + G     G P++ +++ VFPATIEL T+A I+   +G+P+G LA  R+GKW
Sbjct: 85  YFNALLHGDLGNALLTGRPVIDDIIRVFPATIELATMAIIVGAGLGVPLGVLAAARRGKW 144

Query: 106 LDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQ--IDHVTGFALIDA 163
            D ++ FIS++GYS PIFW+ +M ++ F         AGR D+ Y   +++ TG  L+D+
Sbjct: 145 ADYVVRFISLAGYSTPIFWVGMMGLLVFYAWLNWVGGAGRVDMAYDGLVENRTGLLLVDS 204

Query: 164 FLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLS 223
            L  +    +  +S + HL LP  +L       +    R+ +   ++Q YI  A++KGLS
Sbjct: 205 MLDGN---WEVFRSALNHLVLPATLLGFHSLAYISRMTRSFMLAQLSQEYIITARVKGLS 261

Query: 224 NYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSI 283
            +++V  H  RN +  ++    +   S+L  A++ E++F+WPG G +L  +L   D  ++
Sbjct: 262 EFRVVWAHAFRNILVQLLTVVALAYGSLLEGAVLIETVFSWPGFGSYLTGSLLLGDMNAV 321

Query: 284 QAGVIVVGTLVLTANILSDLIGAAANPLVR 313
              V++VG + ++ N+LSD++    +P  R
Sbjct: 322 MGCVLLVGLIFVSLNLLSDMLYQVFDPRTR 351