Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., ABC transporter permease from Dickeya dianthicola ME23

 Score =  169 bits (428), Expect = 9e-47
 Identities = 89/277 (32%), Positives = 153/277 (55%), Gaps = 10/277 (3%)

Query: 41  WQGWSSYLVQLMEFNFG---LNKNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
           W  +  YL QL+  + G   L  N  P+  ++   FPAT+EL T A I++ LVGIP+G  
Sbjct: 64  WMQYGHYLNQLLHGDLGRSVLTSN--PVTTDIARYFPATLELATAAIIVAALVGIPLGVW 121

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQ--IDHV 155
           A +RQG+W+D +I  I ++G+S P+F LAL+ ++ F     + P  GR D+L+Q  + HV
Sbjct: 122 AAVRQGRWVDQVIRIICLAGHSLPVFVLALLSLLIFYAVLGIAPGPGRQDILFQDMVPHV 181

Query: 156 TGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIR 215
           TG   +DA L+       AL+  + H+  P L+LA      +    R  +   ++  ++ 
Sbjct: 182 TGLLTVDALLAGD---YDALRDALAHMVQPVLILAYFSMAYITRMTRTFMLNALSGEFVI 238

Query: 216 AAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDAL 275
            A+ KGLS+ ++V +H        ++    +  + +L  A++TE++F+WPG+G++L  AL
Sbjct: 239 TARAKGLSSRRVVWRHAFPTVAVQLVTVLSLTYAGLLEGAVVTENVFSWPGLGQYLTTAL 298

Query: 276 ANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLV 312
            N D   +    ++VG + +  N+L+D+     +P V
Sbjct: 299 LNADMNPVVGATLLVGAVYVLLNLLADIFYRLLDPRV 335