Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Dickeya dadantii 3937

 Score =  206 bits (525), Expect = 5e-58
 Identities = 109/339 (32%), Positives = 192/339 (56%), Gaps = 29/339 (8%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLIG--------------------- 39
           M  + +R+  L I T + +T++ ++     P  P  ++                      
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHLIPGDPVMIMAGERGISPERHAQLMAELGLDK 60

Query: 40  -FWQGWSSYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTL 97
             W+ +  Y+  ++  + G++ K+ +P+  E +  F AT+EL   A I +++VGIP+G L
Sbjct: 61  PLWEQYLHYINGVLHGDLGMSLKSRIPVWDEFVPRFKATLELGVCAMIFAVIVGIPVGVL 120

Query: 98  AGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRY-DLLYQIDHV- 155
           A +++G   D     I+++GYS PIFW  +M+IM  S+   + PV+GR  D ++  D + 
Sbjct: 121 AAVKRGSVFDHTAVSIALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRVGDTVFLDDSLP 180

Query: 156 -TGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYI 214
            TGF LID  +  +       +  + H+ LP +VL   P   ++   R+++ EV+ ++YI
Sbjct: 181 LTGFMLIDTLIWGA---EGDFKDAVMHMLLPAVVLGTIPLAVIVRMTRSAMLEVLGEDYI 237

Query: 215 RAAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDA 274
           R A+ KGL   +++  H LRNA+ P++   G+Q+ +ML  AI+TE+IF+WPG+GRWL+DA
Sbjct: 238 RTARAKGLGRLRVIVVHALRNAMLPVVTVIGLQVGTMLAGAILTETIFSWPGLGRWLIDA 297

Query: 275 LANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVR 313
           L  RD+  +Q+GV++V T+++  N+L D++    NP +R
Sbjct: 298 LQRRDYPVVQSGVLLVATMIILVNLLVDVLYGVVNPRIR 336