Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 314 a.a., nickel ABC transporter permease from Escherichia coli BL21

 Score =  142 bits (357), Expect = 1e-38
 Identities = 90/339 (26%), Positives = 163/339 (48%), Gaps = 56/339 (16%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPW--------------------TLIGF 40
           M  Y +R+F L I  +L  +++ + + R     P                     T++G 
Sbjct: 1   MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNLPPTPEMLASTRTMLGL 60

Query: 41  WQG----WSSYLVQLMEFNFGLN-KNGVPILHELLVVFPATIELCTIAFILSLLVGIPIG 95
            Q     + ++L + +  +FG++  +  P+L ++L   PAT+EL   A +L LL  +P+G
Sbjct: 61  DQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATLELAGAALVLILLTSVPLG 120

Query: 96  TLAGMRQGKWLDTIISFISMSGYSAPIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHV 155
             A   + +  D  + FI+  G S P FWLA +++MAFS++    P  G           
Sbjct: 121 IWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSVYLQWLPAMG----------- 169

Query: 156 TGFALIDAFLSQSPYRSQALQSVIEHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIR 215
                                   +H+ LP + +A          +RAS+ +V  Q ++ 
Sbjct: 170 --------------------YGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVT 209

Query: 216 AAKIKGLSNYQIVTQHVLRNAIPPMIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDAL 275
            A+++GL++ Q   +H+LRNA  PMI   G+ +  ++   +I E+IF WPG+GR+ + A+
Sbjct: 210 WARLRGLNDKQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAI 269

Query: 276 ANRDFMSIQAGVIVVGTLVLTANILSDLIGAAANPLVRK 314
            NRD+  IQ   +++  + +  N++ DL+ AA +P +R+
Sbjct: 270 FNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIRR 308