Pairwise Alignments

Query, 320 a.a., antimicrobial peptide ABC transporter permease SapB from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., antimicrobial peptide transport ABC transporter permease from Escherichia coli BL21

 Score =  346 bits (887), Expect = e-100
 Identities = 159/321 (49%), Positives = 235/321 (73%), Gaps = 1/321 (0%)

Query: 1   MFVYTVRKFNLFIITLLILTMVGYSLARFDPHSPWTLIGFWQGWSSYLVQLMEFNFGLNK 60
           M ++T+R+  L I+TL +LT VG+SL+ F PH+P      W  W  +   L+ ++FG++ 
Sbjct: 1   MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAWVFWFNGLIHWDFGVSS 60

Query: 61  -NGVPILHELLVVFPATIELCTIAFILSLLVGIPIGTLAGMRQGKWLDTIISFISMSGYS 119
            NG PI  +L  VFPAT+ELC +AF  +L+VGIP+G +AG+ + KW D +I+ I++ G+S
Sbjct: 61  INGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGITRHKWQDNLINAIALLGFS 120

Query: 120 APIFWLALMMIMAFSLHFPVFPVAGRYDLLYQIDHVTGFALIDAFLSQSPYRSQALQSVI 179
            P+FWLAL++ +  SL     PV+GR+DLLY++  +TGFALIDA+LS SP+R + + S I
Sbjct: 121 IPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFALIDAWLSDSPWRDEMIMSAI 180

Query: 180 EHLTLPCLVLALAPTTQVIGQMRASVAEVMNQNYIRAAKIKGLSNYQIVTQHVLRNAIPP 239
            H+ LP + L++APTT+VI  MR S  EV +QNY++AA  +GLS + I+ +HVL NA+PP
Sbjct: 181 RHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAAATRGLSRFTILRRHVLHNALPP 240

Query: 240 MIPKFGVQLSSMLTLAIITESIFNWPGIGRWLLDALANRDFMSIQAGVIVVGTLVLTANI 299
           +IP+ G+Q S+MLTLA+ITE +F+WPG+GRWL++A+  +D+ +I AGV+V G+LV+  N+
Sbjct: 241 VIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVCGSLVIIVNV 300

Query: 300 LSDLIGAAANPLVRKEWYVKR 320
           +SD++GA ANPL  KEWY  R
Sbjct: 301 ISDILGAMANPLKHKEWYALR 321